RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 DGKGP49619 791 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 GRM2Q14416 872 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 ZNF326Q5BKZ1 582 aaKnown RBP11.1□□□□□ -0.63
SDCBP-208ENST00000520228 CCNJLQ8IV13 435 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 ZNF417Q8TAU3 575 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 NUDT8Q8WV74 236 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 FRMD6Q96NE9 622 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 ZNF587Q96SQ5 575 aaPredicted RBP11.1□□□□□ -0.63
SDCBP-208ENST00000520228 POP1Q99575 1024 aaKnown RBP11.1□□□□□ -0.63
SDCBP-208ENST00000520228 ENAMQ9NRM1 1142 aa11.1□□□□□ -0.63
SDCBP-208ENST00000520228 PDE2AO00408 941 aaPredicted RBP11.09□□□□□ -0.63
SDCBP-208ENST00000520228 DAB2P98082 770 aa11.09□□□□□ -0.63
SDCBP-208ENST00000520228 CEP135Q66GS9 1140 aa11.09□□□□□ -0.63
SDCBP-208ENST00000520228 PRPF40BQ6NWY9 871 aaKnown RBP11.09□□□□□ -0.63
SDCBP-208ENST00000520228 C8orf86Q6ZUL3 223 aa11.09□□□□□ -0.63
SDCBP-208ENST00000520228 ILDR2Q71H61 639 aa11.09□□□□□ -0.63
SDCBP-208ENST00000520228 OSBPL7Q9BZF2 842 aa11.09□□□□□ -0.63
SDCBP-208ENST00000520228 EEA1Q15075 1411 aa11.09□□□□□ -0.63
SDCBP-208ENST00000520228 PRXQ9BXM0 1461 aa11.08□□□□□ -0.64
SDCBP-208ENST00000520228 GADD45BO75293 160 aaPredicted RBP11.08□□□□□ -0.64
SDCBP-208ENST00000520228 SMNDC1O75940 238 aaKnown RBP eCLIP11.08□□□□□ -0.64
SDCBP-208ENST00000520228 AFF1P51825 1210 aaKnown RBP11.08□□□□□ -0.64
SDCBP-208ENST00000520228 TMC4Q7Z404 712 aa11.08□□□□□ -0.64
SDCBP-208ENST00000520228 BCO2Q9BYV7 579 aa11.08□□□□□ -0.64
SDCBP-208ENST00000520228 EHD4Q9H223 541 aa11.08□□□□□ -0.64
SDCBP-208ENST00000520228 LIN7BQ9HAP6 207 aa11.08□□□□□ -0.64
SDCBP-208ENST00000520228 JPH1Q9HDC5 661 aaPredicted RBP11.08□□□□□ -0.64
SDCBP-208ENST00000520228 TRIM33Q9UPN9 1127 aa11.08□□□□□ -0.64
SDCBP-208ENST00000520228 GIPC1O14908 333 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 LILRB5O75023 590 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 AMPD1P23109 780 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 INSM1Q01101 510 aaPredicted RBP11.07□□□□□ -0.64
SDCBP-208ENST00000520228 NEDD1Q8NHV4 660 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 ADAM19Q9H013 955 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 SPG7Q9UQ90 795 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 ERCC6L2Q5T890 1561 aa11.07□□□□□ -0.64
SDCBP-208ENST00000520228 NXPE4Q6UWF7 544 aa11.06□□□□□ -0.64
SDCBP-208ENST00000520228 ABCB6Q9NP58 842 aa11.06□□□□□ -0.64
SDCBP-208ENST00000520228 AK5Q9Y6K8 562 aa11.06□□□□□ -0.64
SDCBP-208ENST00000520228 NID1P14543 1247 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 BAG6P46379 1132 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 GRIA4P48058 902 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 SNRPNP63162 240 aaKnown RBP11.05□□□□□ -0.64
SDCBP-208ENST00000520228 LINC00114Q6XXX2 140 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 SRCIN1Q9C0H9 1055 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 C12orf49Q9H741 205 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 TRAK1Q9UPV9 953 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 SHROOM2Q13796 1616 aa11.05□□□□□ -0.64
SDCBP-208ENST00000520228 UNCXA6NJT0 531 aa11.04□□□□□ -0.64
SDCBP-208ENST00000520228 METTL12A8MUP2 240 aa11.04□□□□□ -0.64
SDCBP-208ENST00000520228 XPCQ01831 940 aaPredicted RBP11.04□□□□□ -0.64
SDCBP-208ENST00000520228 CACTIN-AS1Q8N1I8 211 aa11.04□□□□□ -0.64
SDCBP-208ENST00000520228 ZNF428Q96B54 188 aa11.04□□□□□ -0.64
SDCBP-208ENST00000520228 FAM161BQ96MY7 647 aa11.04□□□□□ -0.64
SDCBP-208ENST00000520228 CARMIL2Q6F5E8 1435 aa11.03□□□□□ -0.64
SDCBP-208ENST00000520228 MRPL58Q14197 206 aaKnown RBP11.03□□□□□ -0.64
SDCBP-208ENST00000520228 SOX13Q9UN79 622 aa11.03□□□□□ -0.64
SDCBP-208ENST00000520228 TMEM238LA0A1B0GVL6 79 aa11.02□□□□□ -0.65
SDCBP-208ENST00000520228 ITPKAP23677 461 aa11.02□□□□□ -0.65
SDCBP-208ENST00000520228 PSMD2Q13200 908 aa11.02□□□□□ -0.65
SDCBP-208ENST00000520228 SPRED3Q2MJR0 410 aa11.02□□□□□ -0.65
SDCBP-208ENST00000520228 GDF6Q6KF10 455 aaPredicted RBP11.02□□□□□ -0.65
SDCBP-208ENST00000520228 C3orf58Q8NDZ4 430 aa11.02□□□□□ -0.65
SDCBP-208ENST00000520228 ADAMTS8Q9UP79 889 aa11.02□□□□□ -0.65
SDCBP-208ENST00000520228 TTBK1Q5TCY1 1321 aaPredicted RBP11.02□□□□□ -0.65
SDCBP-208ENST00000520228 A0A096LPE4 126 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 A0A1W2PPZ6 126 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 PTPRAP18433 802 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 PTPN12Q05209 780 aaKnown RBP11.01□□□□□ -0.65
SDCBP-208ENST00000520228 MSL1Q68DK7 614 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 BSNDQ8WZ55 320 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 LACRTQ9GZZ8 138 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 RRAGCQ9HB90 399 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 IQGAP2Q13576 1575 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 PTPRGP23470 1445 aa11.01□□□□□ -0.65
SDCBP-208ENST00000520228 SORBS3O60504 671 aa11□□□□□ -0.65
SDCBP-208ENST00000520228 EIF4BP23588 611 aaKnown RBP11□□□□□ -0.65
SDCBP-208ENST00000520228 CDC27P30260 824 aa11□□□□□ -0.65
SDCBP-208ENST00000520228 VN1R5Q7Z5H4 357 aa11□□□□□ -0.65
SDCBP-208ENST00000520228 MUC3BQ9H195 1237 aa11□□□□□ -0.65
SDCBP-208ENST00000520228 SH2B1Q9NRF2 756 aaPredicted RBP11□□□□□ -0.65
SDCBP-208ENST00000520228 FAM8A1Q9UBU6 413 aa11□□□□□ -0.65
SDCBP-208ENST00000520228 TNIKQ9UKE5 1360 aa11□□□□□ -0.65
SDCBP-208ENST00000520228 IL22RA1Q8N6P7 574 aa10.99□□□□□ -0.65
SDCBP-208ENST00000520228 ASAP3Q8TDY4 903 aa10.99□□□□□ -0.65
SDCBP-208ENST00000520228 TRIM11Q96F44 468 aa10.99□□□□□ -0.65
SDCBP-208ENST00000520228 PPP4R2Q9NY27 417 aa10.99□□□□□ -0.65
SDCBP-208ENST00000520228 KIAA1522Q9P206 1035 aaPredicted RBP10.99□□□□□ -0.65
SDCBP-208ENST00000520228 CTSHP09668 335 aa10.98□□□□□ -0.65
SDCBP-208ENST00000520228 XRCC5P13010 732 aaKnown RBP10.98□□□□□ -0.65
SDCBP-208ENST00000520228 EPHA1P21709 976 aa10.98□□□□□ -0.65
SDCBP-208ENST00000520228 VAMP1P23763 118 aa10.98□□□□□ -0.65
SDCBP-208ENST00000520228 FCGRTP55899 365 aa10.98□□□□□ -0.65
SDCBP-208ENST00000520228 USP17L7P0C7H9 530 aa10.97□□□□□ -0.65
SDCBP-208ENST00000520228 GSTT1P30711 240 aa10.97□□□□□ -0.65
SDCBP-208ENST00000520228 WFDC8Q8IUA0 241 aa10.97□□□□□ -0.65
SDCBP-208ENST00000520228 ANKRD24Q8TF21 1146 aa10.97□□□□□ -0.65
SDCBP-208ENST00000520228 ZNF576Q9H609 170 aa10.97□□□□□ -0.65
SDCBP-208ENST00000520228 MKL2Q9ULH7 1088 aa10.97□□□□□ -0.65
SDCBP-208ENST00000520228 PPME1Q9Y570 386 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms