RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 NDUFB5O43674 189 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 SMNDC1O75940 238 aaKnown RBP eCLIP6.67□□□□□ -1.34
NUP54-212ENST00000513248 TGFB1P01137 390 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 SPINK2P20155 84 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 GRIK1P39086 918 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 GP2P55259 537 aaKnown RBP6.67□□□□□ -1.34
NUP54-212ENST00000513248 NFIAQ12857 509 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 NCAPG2Q86XI2 1143 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 KLHL23Q8NBE8 558 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 SNX29Q8TEQ0 813 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 OAS3Q9Y6K5 1087 aaKnown RBP6.67□□□□□ -1.34
NUP54-212ENST00000513248 ZCCHC6Q5VYS8 1495 aaKnown RBP6.66□□□□□ -1.34
NUP54-212ENST00000513248 MYO15BQ96JP2 1530 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 PHACTR2O75167 634 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 TNFRSF21O75509 655 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 WISP1O95388 367 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 YBX3P16989 372 aaKnown RBP eCLIP6.66□□□□□ -1.34
NUP54-212ENST00000513248 CES1P23141 567 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 CDC27P30260 824 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 ATP11AP98196 1134 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 ACAD11Q709F0 780 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 UTP4Q969X6 686 aaKnown RBP6.66□□□□□ -1.34
NUP54-212ENST00000513248 DBNDD2Q9BQY9 259 aa6.66□□□□□ -1.34
NUP54-212ENST00000513248 BIN2Q9UBW5 565 aaPredicted RBP6.66□□□□□ -1.34
NUP54-212ENST00000513248 FOXD3Q9UJU5 478 aaPredicted RBP6.66□□□□□ -1.34
NUP54-212ENST00000513248 LINC01387J3KSC0 135 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 PDE3BQ13370 1112 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 RNF43Q68DV7 783 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 DTX1Q86Y01 620 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 CEP120Q8N960 986 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 PMEPA1Q969W9 287 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 MYRFLQ96LU7 910 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 DMRTB1Q96MA1 342 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 RASSF4Q9H2L5 321 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 SALL4Q9UJQ4 1053 aa6.65□□□□□ -1.34
NUP54-212ENST00000513248 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.65□□□□□ -1.34
NUP54-212ENST00000513248 EREGO14944 169 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 TAL1P17542 331 aaPredicted RBP6.64□□□□□ -1.35
NUP54-212ENST00000513248 FMR1Q06787 632 aaKnown RBP eCLIP6.64□□□□□ -1.35
NUP54-212ENST00000513248 CEP135Q66GS9 1140 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 FAM117BQ6P1L5 589 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 KIAA1211Q6ZU35 1233 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 PBX4Q9BYU1 374 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 C7orf69Q9H7B7 122 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 KCNK4Q9NYG8 393 aa6.64□□□□□ -1.35
NUP54-212ENST00000513248 FSCN2O14926 492 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 ACPPP15309 386 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 MAPK1P28482 360 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 COL19A1Q14993 1142 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 NPAS4Q8IUM7 802 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 WNT8BQ93098 351 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 LACRTQ9GZZ8 138 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 ZFYVE28Q9HCC9 887 aa6.63□□□□□ -1.35
NUP54-212ENST00000513248 PRR19A6NJB7 356 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 DUOXA2Q1HG44 320 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 CCDC27Q2M243 656 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 ANKRD34AQ69YU3 496 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.62□□□□□ -1.35
NUP54-212ENST00000513248 CLEC10AQ8IUN9 316 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 TRIM42Q8IWZ5 723 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 FAM20CQ8IXL6 584 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 FAM83CQ9BQN1 747 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 ADAM19Q9H013 955 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 AMOTL2Q9Y2J4 779 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 HIF3AQ9Y2N7 669 aa6.62□□□□□ -1.35
NUP54-212ENST00000513248 DCAF1Q9Y4B6 1507 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 HMX2A2RU54 273 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 EDN3P14138 238 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 PTPRAP18433 802 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 TXNDC11Q6PKC3 985 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 SEC31BQ9NQW1 1179 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 DZANK1Q9NVP4 752 aa6.61□□□□□ -1.35
NUP54-212ENST00000513248 ANKRD33BA6NCL7 494 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 FAM177BA6PVY3 158 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 NFKBIEO00221 500 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 ADAMTS4O75173 837 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 WNT11O96014 354 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 NEFLP07196 543 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 EPHA1P21709 976 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 PIP4K2BP78356 416 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 ORC1Q13415 861 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 TMCO4Q5TGY1 634 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 ADAMTSL4Q6UY14 1074 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 ZSCAN29Q8IWY8 852 aaPredicted RBP6.6□□□□□ -1.35
NUP54-212ENST00000513248 TMC1Q8TDI8 760 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 FOXD4L4Q8WXT5 416 aaPredicted RBP6.6□□□□□ -1.35
NUP54-212ENST00000513248 POP1Q99575 1024 aaKnown RBP6.6□□□□□ -1.35
NUP54-212ENST00000513248 ZKSCAN3Q9BRR0 538 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 CARD10Q9BWT7 1032 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 NIF3L1Q9GZT8 377 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 DNAJC25Q9H1X3 360 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 OSGEPQ9NPF4 335 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 RNF114Q9Y508 228 aa6.6□□□□□ -1.35
NUP54-212ENST00000513248 SCRIBQ14160 1630 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 H3BRJ5 948 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 PDE2AO00408 941 aaPredicted RBP6.59□□□□□ -1.35
NUP54-212ENST00000513248 EIF1AYO14602 144 aaKnown RBP6.59□□□□□ -1.35
NUP54-212ENST00000513248 ADAM11O75078 769 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 TRPA1O75762 1119 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 POLR3DP05423 398 aaPredicted RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms