RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TIAM1Q13009 1591 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 URI1O94763 535 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 NOLC1Q14978 699 aaKnown RBP eCLIP4.05□□□□□ -1.76
USP53-205ENST00000509769 PPP2R5EQ16537 467 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GLE1Q53GS7 698 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 CCDC122Q5T0U0 273 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 FKBP15Q5T1M5 1219 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GJC2Q5T442 439 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 SPAG5Q96R06 1193 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.05□□□□□ -1.76
USP53-205ENST00000509769 PRDM10Q9NQV6 1147 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 TCEAL9Q9UHQ7 104 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 TROQ12816 1431 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 CCDC18Q5T9S5 1454 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 IQCA1LA6NCM1 817 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GOLGA6CA6NDK9 693 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GOLGA6BA6NDN3 693 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 PPP1R12AO14974 1030 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 GOLGA6DP0CG33 693 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 KRT5P13647 590 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 ESRRGP62508 458 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 TUBA4AP68366 448 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 BASP1P80723 227 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 FLOT2Q14254 428 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 MYSM1Q5VVJ2 828 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 FAM186BQ8IYM0 893 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 MSANTD4Q8NCY6 345 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 PRPF31Q8WWY3 499 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 CABS1Q96KC9 395 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 SCLT1Q96NL6 688 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 CCDC113Q9H0I3 377 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GOLGA6AQ9NYA3 693 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 SCOCQ9UIL1 159 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 PPP1R9AQ9ULJ8 1098 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 NOL7Q9UMY1 257 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 ANGPTL3Q9Y5C1 460 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 ZC3H13Q5T200 1668 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 A0A0G2JS52 829 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 GOLGA8KD6RF30 607 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 TAOK1Q7L7X3 1001 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 AFAP1L2Q8N4X5 818 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 MPP4Q96JB8 637 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 LRRC27Q9C0I9 530 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 SMG6Q86US8 1419 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 SH3BP5O60239 455 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 FRAT2O75474 233 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 TOP1P11387 765 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 HARSP12081 509 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 SP100P23497 879 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 NEK2P51955 445 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 SFSWAPQ12872 951 aaKnown RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 NFE2L2Q16236 605 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 STX1AQ16623 288 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 CPLX4Q7Z7G2 160 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 TEX9Q8N6V9 391 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 HELBQ8NG08 1087 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 BHMTQ93088 406 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 NRBF2Q96F24 287 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 SH2B1Q9NRF2 756 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 JRKLQ9Y4A0 524 aa4.05□□□□□ -1.76
USP53-205ENST00000509769 COL16A1Q07092 1604 aaPredicted RBP4.05□□□□□ -1.76
USP53-205ENST00000509769 ARHGAP10A1A4S6 786 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KDM1AO60341 852 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 BRD4O60885 1362 aaPredicted RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 KRT7P08729 469 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 LMNB1P20700 586 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KCNA4P22459 653 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 PPP1R2P41236 205 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KRT83P78385 493 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 TUBA3CQ13748 450 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 SART3Q15020 963 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 CCDC102BQ68D86 513 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 C16orf71Q8IYS4 520 aaPredicted RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 MTRF1LQ9UGC7 380 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 TSKSQ9UJT2 592 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 CHUKO15111 745 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KRT18P05783 430 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 SKIP12755 728 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 ATP2A2P16615 1042 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 PHBP35232 272 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 PSMC4P43686 418 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 DRP2Q13474 957 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 STK38Q15208 465 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 CCDC96Q2M329 555 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 ZNF449Q6P9G9 518 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KRT27Q7Z3Y8 459 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 MORC1Q86VD1 984 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KLHDC4Q8TBB5 520 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 EPSTI1Q96J88 318 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 TSC22D3Q99576 134 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 MRPL46Q9H2W6 279 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 ANO2Q9NQ90 1003 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 GMEB1Q9Y692 573 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 DLC1Q96QB1 1528 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 E7ENQ6 273 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 PRC1O43663 620 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 CLTAP09496 248 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 HSPA8P11142 646 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 CYLC1P35663 651 aaPredicted RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 MAGEA9P43362 315 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms