RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RAPGEF3O95398 923 aa7.25□□□□□ -1.25
NUP54-206ENST00000508465 FKBP5Q13451 457 aaPredicted RBP7.25□□□□□ -1.25
NUP54-206ENST00000508465 RNF43Q68DV7 783 aa7.25□□□□□ -1.25
NUP54-206ENST00000508465 C16orf46Q6P387 395 aa7.25□□□□□ -1.25
NUP54-206ENST00000508465 ETFBKMTQ8IXQ9 262 aa7.25□□□□□ -1.25
NUP54-206ENST00000508465 DBNDD2Q9BQY9 259 aa7.25□□□□□ -1.25
NUP54-206ENST00000508465 RNF114Q9Y508 228 aa7.25□□□□□ -1.25
NUP54-206ENST00000508465 EFCAB5A4FU69 1503 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 A6NJR5 290 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 SART1O43290 800 aaKnown RBP7.24□□□□□ -1.25
NUP54-206ENST00000508465 CDC25BP30305 580 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 SWI5Q1ZZU3 235 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 TXNDC11Q6PKC3 985 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 TRIM42Q8IWZ5 723 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 FAM46AQ96IP4 442 aaKnown RBP7.24□□□□□ -1.25
NUP54-206ENST00000508465 PRIMPOLQ96LW4 560 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 C7orf69Q9H7B7 122 aa7.24□□□□□ -1.25
NUP54-206ENST00000508465 PPRC1Q5VV67 1664 aaKnown RBP7.24□□□□□ -1.25
NUP54-206ENST00000508465 CDK13Q14004 1512 aaKnown RBP7.23□□□□□ -1.25
NUP54-206ENST00000508465 HMX2A2RU54 273 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 FSCN2O14926 492 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 WISP1O95388 367 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 WNT11O96014 354 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 ATP11AP98196 1134 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 CLEC10AQ8IUN9 316 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 MYRFLQ96LU7 910 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 NOVA2Q9UNW9 492 aaKnown RBP7.23□□□□□ -1.25
NUP54-206ENST00000508465 CLIP1P30622 1438 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 KDM6BO15054 1643 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 MAP3K4Q9Y6R4 1608 aa7.23□□□□□ -1.25
NUP54-206ENST00000508465 FMN1Q68DA7 1419 aa7.22□□□□□ -1.25
NUP54-206ENST00000508465 TRIP4Q15650 581 aaPredicted RBP7.22□□□□□ -1.25
NUP54-206ENST00000508465 KIAA1211Q6ZU35 1233 aa7.22□□□□□ -1.25
NUP54-206ENST00000508465 COL26A1Q96A83 441 aa7.22□□□□□ -1.25
NUP54-206ENST00000508465 FAM83CQ9BQN1 747 aa7.22□□□□□ -1.25
NUP54-206ENST00000508465 CARD10Q9BWT7 1032 aa7.22□□□□□ -1.25
NUP54-206ENST00000508465 KCNK4Q9NYG8 393 aa7.22□□□□□ -1.25
NUP54-206ENST00000508465 CDK11AQ9UQ88 783 aaPredicted RBP7.22□□□□□ -1.25
NUP54-206ENST00000508465 PRMT3O60678 531 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 PTPRAP18433 802 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 SPINK2P20155 84 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 CDCA8Q53HL2 280 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 COL13A1Q5TAT6 717 aaPredicted RBP7.21□□□□□ -1.26
NUP54-206ENST00000508465 NCAPG2Q86XI2 1143 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 DTX1Q86Y01 620 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 PBX4Q9BYU1 374 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 SAP130Q9H0E3 1048 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 RASSF4Q9H2L5 321 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 KCNF1Q9H3M0 494 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 SEC31BQ9NQW1 1179 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 TEX14Q8IWB6 1497 aa7.21□□□□□ -1.26
NUP54-206ENST00000508465 ACIN1Q9UKV3 1341 aaKnown RBP7.21□□□□□ -1.26
NUP54-206ENST00000508465 KRTAP4-8A0A0G2JLE6 195 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 PRR19A6NJB7 356 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 CABP4P57796 275 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 ANKRD34AQ69YU3 496 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 FAM20CQ8IXL6 584 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 GIMAP7Q8NHV1 300 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 ABI2Q9NYB9 513 aaPredicted RBP7.2□□□□□ -1.26
NUP54-206ENST00000508465 MAGI3Q5TCQ9 1506 aa7.2□□□□□ -1.26
NUP54-206ENST00000508465 KIF4AO95239 1232 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 BMP3P12645 472 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 ZAP70P43403 619 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 CFAP70Q5T0N1 1121 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 BEND4Q6ZU67 534 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 WNT8BQ93098 351 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 KLHDC7BQ96G42 594 aa7.19□□□□□ -1.26
NUP54-206ENST00000508465 SH2B1Q9NRF2 756 aaPredicted RBP7.19□□□□□ -1.26
NUP54-206ENST00000508465 DDX3YO15523 660 aaKnown RBP7.18□□□□□ -1.26
NUP54-206ENST00000508465 PRKCSHP14314 528 aaPredicted RBP7.18□□□□□ -1.26
NUP54-206ENST00000508465 EFCAB2Q5VUJ9 269 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 SHKBP1Q8TBC3 707 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 GPR152Q8TDT2 470 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 ADAM19Q9H013 955 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 RNF208Q9H0X6 261 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 OSGEPQ9NPF4 335 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 HIF3AQ9Y2N7 669 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 CFAP43Q8NDM7 1665 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 CEP162Q5TB80 1403 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 CASKIN1Q8WXD9 1431 aa7.18□□□□□ -1.26
NUP54-206ENST00000508465 TM4SF5O14894 197 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 ADAMTS4O75173 837 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 EPHA1P21709 976 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 ARL4DP49703 201 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 PIP4K2BP78356 416 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 FDX2Q6P4F2 183 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.17□□□□□ -1.26
NUP54-206ENST00000508465 CEP120Q8N960 986 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 UBASH3BQ8TF42 649 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 FOXD4L4Q8WXT5 416 aaPredicted RBP7.17□□□□□ -1.26
NUP54-206ENST00000508465 AKNAQ7Z591 1439 aa7.17□□□□□ -1.26
NUP54-206ENST00000508465 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.17□□□□□ -1.26
NUP54-206ENST00000508465 ABCA9Q8IUA7 1624 aa7.16□□□□□ -1.26
NUP54-206ENST00000508465 H3BRJ5 948 aa7.16□□□□□ -1.26
NUP54-206ENST00000508465 NAA30Q147X3 362 aaPredicted RBP7.16□□□□□ -1.26
NUP54-206ENST00000508465 OCLNQ16625 522 aa7.16□□□□□ -1.26
NUP54-206ENST00000508465 AFAP1Q8N556 730 aa7.16□□□□□ -1.26
NUP54-206ENST00000508465 ABTB2Q8N961 1025 aa7.16□□□□□ -1.26
NUP54-206ENST00000508465 POP1Q99575 1024 aaKnown RBP7.16□□□□□ -1.26
NUP54-206ENST00000508465 STIM2Q9P246 746 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms