RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TMEM266Q2M3C6 531 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 NBPF5PQ86XG9 351 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 TMEM87BQ96K49 555 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 PDE8AO60658 829 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 A1BGP04217 495 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 MARCKSP29966 332 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 POLA2Q14181 598 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 FKBP15Q5T1M5 1219 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 TMCO3Q6UWJ1 677 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 NYXQ9GZU5 481 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 CCDC181Q5TID7 509 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 ISM2Q6H9L7 571 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 CDC37L1Q7L3B6 337 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 LEO1Q8WVC0 666 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 RMND1Q9NWS8 449 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 MYO6Q9UM54 1294 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 AGLP35573 1532 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 URI1O94763 535 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 ZNF594Q96JF6 807 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 CDCA7Q9BWT1 371 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 ZHX3Q9H4I2 956 aa12.37□□□□□ -0.43
LIMCH1-205ENST00000503057 A0A0D9SFI3 127 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 FGFR1OPO95684 399 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 TUBB4AP04350 444 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 USP31Q70CQ4 1352 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 PDE4CQ08493 712 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 PKP1Q13835 747 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 LUZP1Q86V48 1076 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 GTF3C6Q969F1 213 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 HAUS7Q99871 368 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 PARP10Q53GL7 1025 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 ZSCAN29Q8IWY8 852 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 ACSBG1Q96GR2 724 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 NGLY1Q96IV0 654 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 TSG101Q99816 390 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 COPRSQ9NQ92 184 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 YEATS4O95619 227 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 SSBP05455 408 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 AMPD3Q01432 767 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 NOM1Q5C9Z4 860 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 UNC5CLQ8IV45 518 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 CTAGE1Q96RT6 745 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 SETDB2Q96T68 719 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 BTG4Q9NY30 223 aa12.36□□□□□ -0.43
LIMCH1-205ENST00000503057 MPHOSPH10O00566 681 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 CUL4AQ13619 759 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 PPP1R9BQ96SB3 815 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 NUP88Q99567 741 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 TCP11L1Q9NUJ3 509 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 GPT2Q8TD30 523 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 NLRP3Q96P20 1036 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 GBP3Q9H0R5 595 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 ELP1O95163 1332 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 GPAA1O43292 621 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 PROSER3Q2NL68 480 aa12.35□□□□□ -0.43
LIMCH1-205ENST00000503057 PTGS1P23219 599 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 GNAQP50148 359 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 HELBQ8NG08 1087 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 MBD4O95243 580 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 LEKR1Q6ZMV7 388 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 MAP4K1Q92918 833 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 ANGEL1Q9UNK9 670 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 RFC4P35249 363 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 KRT2P35908 639 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 TCIRG1Q13488 830 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 SPA17Q15506 151 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 CT47A1Q5JQC4 288 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 RBM28Q9NW13 759 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 TRIM75PA6NK02 468 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 E7EWF7 191 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 FAM114A1Q8IWE2 563 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 CALML4Q96GE6 196 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 MROH5Q6ZUA9 1318 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 CRACR2BQ8N4Y2 399 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 DDX17Q92841 729 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 TPCN1Q9ULQ1 816 aa12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 IQSEC3Q9UPP2 1182 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-205ENST00000503057 NRKQ7Z2Y5 1582 aa12.33□□□□□ -0.43
LIMCH1-205ENST00000503057 SH3TC1Q8TE82 1336 aa12.33□□□□□ -0.43
LIMCH1-205ENST00000503057 HSPA2P54652 639 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 MTMR6Q9Y217 621 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 NDUFB9Q9Y6M9 179 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 ZNF76P36508 570 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 UBA7P41226 1012 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 LPIN2Q92539 896 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 ANKRD2Q9GZV1 360 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 TSPY3P0CV98 308 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 TSPY8P0CW00 308 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 AEBP2Q6ZN18 517 aaPredicted RBP12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 GPR108Q9NPR9 543 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 FBXO3Q9UK99 471 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 SYCP1Q15431 976 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 KIF4BQ2VIQ3 1234 aa12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 KRI1Q8N9T8 703 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 NCOA5Q9HCD5 579 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-205ENST00000503057 KIF20BQ96Q89 1820 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 ANO1Q5XXA6 986 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 MIGA1Q8NAN2 632 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 CPLX3Q8WVH0 158 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 ZNF274Q96GC6 653 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms