RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 ANKRD30BQ9BXX2 1392 aa7.57□□□□□ -1.2
PTCD3-219ENST00000494323 MARF1Q9Y4F3 1742 aaKnown RBP7.56□□□□□ -1.2
PTCD3-219ENST00000494323 SPATA31E1Q6ZUB1 1445 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 MAP3K10Q02779 954 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 NAA30Q147X3 362 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-219ENST00000494323 RTN1Q16799 776 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 SH3PXD2AQ5TCZ1 1133 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 ALDH16A1Q8IZ83 802 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 PGBD3Q8N328 593 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 HELQQ8TDG4 1101 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 ADAMTS8Q9UP79 889 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 HCN4Q9Y3Q4 1203 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 GPC6Q9Y625 555 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-219ENST00000494323 BRWD3Q6RI45 1802 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 SLIT2O94813 1529 aa7.56□□□□□ -1.2
PTCD3-219ENST00000494323 CDC42BPGQ6DT37 1551 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 TECPR2O15040 1411 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 BLMP54132 1417 aaPredicted RBP7.55□□□□□ -1.2
PTCD3-219ENST00000494323 SOWAHDA6NJG2 315 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 RNF225M0QZC1 329 aaPredicted RBP7.55□□□□□ -1.2
PTCD3-219ENST00000494323 TATP17735 454 aaPredicted RBP7.55□□□□□ -1.2
PTCD3-219ENST00000494323 AIDAQ96BJ3 306 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 PHACTR1Q9C0D0 580 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 BTG4Q9NY30 223 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 NSFL1CQ9UNZ2 370 aaKnown RBP7.55□□□□□ -1.2
PTCD3-219ENST00000494323 TRAK1Q9UPV9 953 aa7.55□□□□□ -1.2
PTCD3-219ENST00000494323 DHX57Q6P158 1386 aaKnown RBP7.55□□□□□ -1.2
PTCD3-219ENST00000494323 GLI3P10071 1580 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 ICMTO60725 284 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 MX2P20592 715 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 MSX1P28360 303 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 TXLNAP40222 546 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 FKBP4Q02790 459 aaKnown RBP eCLIP7.54□□□□□ -1.2
PTCD3-219ENST00000494323 LBRQ14739 615 aaKnown RBP7.54□□□□□ -1.2
PTCD3-219ENST00000494323 HIF1AQ16665 826 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 EFHC2Q5JST6 749 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 COX20Q5RI15 118 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 LYPD4Q6UWN0 246 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 RUBCNLQ9H714 662 aa7.54□□□□□ -1.2
PTCD3-219ENST00000494323 DNMT3AQ9Y6K1 912 aaPredicted RBP7.54□□□□□ -1.2
PTCD3-219ENST00000494323 PIK3C2GO75747 1445 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 FMN2Q9NZ56 1722 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 H3BRB1 525 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 ZNF211Q13398 564 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-219ENST00000494323 GLYCTKQ8IVS8 523 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 ZNF428Q96B54 188 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 SAP130Q9H0E3 1048 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 TUT1Q9H6E5 874 aaKnown RBP7.53□□□□□ -1.2
PTCD3-219ENST00000494323 PHF24Q9UPV7 400 aa7.53□□□□□ -1.2
PTCD3-219ENST00000494323 TNS3Q68CZ2 1445 aa7.52□□□□□ -1.2
PTCD3-219ENST00000494323 SBNO1A3KN83 1393 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 FAM13AO94988 1023 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 ARHGEF15O94989 841 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 THBS1P07996 1170 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 CELA2BP08218 269 aaPredicted RBP7.52□□□□□ -1.21
PTCD3-219ENST00000494323 BAG6P46379 1132 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 C11orf91Q3C1V1 193 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 NUTM2GQ5VZR2 741 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 NGDNQ8NEJ9 315 aaKnown RBP7.52□□□□□ -1.21
PTCD3-219ENST00000494323 RHPN1Q8TCX5 695 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 DCAF11Q8TEB1 546 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 CFHR5Q9BXR6 569 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 ANO2Q9NQ90 1003 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 ENAMQ9NRM1 1142 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 STIM2Q9P246 746 aa7.52□□□□□ -1.21
PTCD3-219ENST00000494323 ARHGEF10O15013 1369 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 NPR3P17342 541 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 ATP4AP20648 1035 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 BRD2P25440 801 aaKnown RBP7.51□□□□□ -1.21
PTCD3-219ENST00000494323 MARSP56192 900 aaKnown RBP7.51□□□□□ -1.21
PTCD3-219ENST00000494323 KCNMA1Q12791 1236 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 BICDL1Q6ZP65 573 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 ABTB2Q8N961 1025 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 CRISPLD1Q9H336 500 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 LRFN2Q9ULH4 789 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.51□□□□□ -1.21
PTCD3-219ENST00000494323 USP32Q8NFA0 1604 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 PRR36Q9H6K5 1346 aa7.51□□□□□ -1.21
PTCD3-219ENST00000494323 NRXN1Q9ULB1 1477 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 IFT172Q9UG01 1749 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 GPRASP1Q5JY77 1395 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 TNFRSF10BO14763 440 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 MAP2K3P46734 347 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 ZC3H6P61129 1189 aaKnown RBP7.5□□□□□ -1.21
PTCD3-219ENST00000494323 DGKZQ13574 1117 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 MTMR3Q13615 1198 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 R3HDM1Q15032 1099 aaKnown RBP7.5□□□□□ -1.21
PTCD3-219ENST00000494323 CHRNA2Q15822 529 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 NOM1Q5C9Z4 860 aaKnown RBP7.5□□□□□ -1.21
PTCD3-219ENST00000494323 ARSJQ5FYB0 599 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-219ENST00000494323 DNAJC14Q6Y2X3 702 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-219ENST00000494323 C7orf43Q8WVR3 580 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 PRDM11Q9NQV5 511 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 STRN4Q9NRL3 753 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 ANKIB1Q9P2G1 1089 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 USP35Q9P2H5 1018 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 BIN2Q9UBW5 565 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-219ENST00000494323 KIF1AQ12756 1690 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 SPATA31A5Q5VU36 1347 aa7.5□□□□□ -1.21
PTCD3-219ENST00000494323 SPATA31A7Q8IWB4 1347 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms