RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 FIGNL1Q6PIW4 674 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 BICDL1Q6ZP65 573 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 CFHR5Q9BXR6 569 aa9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 TSPAN10Q9H1Z9 355 aaPredicted RBP9.09□□□□□ -0.95
PRPF40A-210ENST00000489741 CPSF1Q10570 1443 aaKnown RBP9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 A0A1W2PNR3 127 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 SERTM1A2A2V5 107 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L15C9J2P7 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L10C9JJH3 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L13C9JLJ4 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L12C9JPN9 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L11C9JVI0 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L21D6R901 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L18D6R9N7 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L22D6RA61 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L17D6RBQ6 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L19D6RCP7 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L20D6RJB6 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 PLSCR1O15162 318 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 NOS2P35228 1153 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 USP17L24Q0WX57 530 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 WHAMMQ8TF30 809 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 ZDHHC1Q8WTX9 485 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 ABHD17AQ96GS6 310 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 GJA3Q9Y6H8 435 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 SLIT3O75094 1523 aa9.08□□□□□ -0.96
PRPF40A-210ENST00000489741 WDR17Q8IZU2 1322 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 TTC21AQ8NDW8 1320 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 BCL9O00512 1426 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 DKK1O94907 266 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 RFX1P22670 979 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 TXLNAP40222 546 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 PSMA6P60900 246 aaKnown RBP9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 MAP3K10Q02779 954 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 PTK7Q13308 1070 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 NEUROD1Q13562 356 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 ZNF385CQ66K41 422 aaPredicted RBP9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 NLRP8Q86W28 1048 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 MARCH10Q8NA82 808 aaPredicted RBP9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 KCNH5Q8NCM2 988 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 ATXN7L1Q9ULK2 861 aaPredicted RBP9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 RGPD1P0DJD0 1748 aa9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 TNS1Q9HBL0 1735 aaKnown RBP9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 ROCK2O75116 1388 aaKnown RBP9.07□□□□□ -0.96
PRPF40A-210ENST00000489741 FAM196BA6NMK8 535 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 DPYDQ12882 1025 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 UBAP2LQ14157 1087 aaKnown RBP9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 DDB1Q16531 1140 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 TOM1L2Q6ZVM7 507 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 PTF1AQ7RTS3 328 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 HINFPQ9BQA5 517 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 CARD10Q9BWT7 1032 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 SBNO2Q9Y2G9 1366 aa9.06□□□□□ -0.96
PRPF40A-210ENST00000489741 USP31Q70CQ4 1352 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 PPP1R12BO60237 982 aaPredicted RBP9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 ANKMY2Q8IV38 441 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 PUS7Q96PZ0 661 aaKnown RBP9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 ZIC5Q96T25 663 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 ZCCHC2Q9C0B9 1178 aaKnown RBP9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 PCDHGC4Q9Y5F7 938 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 OVOS2A0A0G2JMS6 1433 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 OVOS2A0A0J9YW53 1432 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 OVOS2Q6IE36 1432 aa9.05□□□□□ -0.96
PRPF40A-210ENST00000489741 ZBTB7CA1YPR0 619 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 ATXN7O15265 892 aaPredicted RBP9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 BNIP3LO60238 219 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 MAP2K3P46734 347 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 CDCA8Q53HL2 280 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 SH3PXD2AQ5TCZ1 1133 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 LYPD4Q6UWN0 246 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 NEUROD4Q9HD90 331 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 COL18A1P39060 1754 aa9.04□□□□□ -0.96
PRPF40A-210ENST00000489741 KTN1Q86UP2 1357 aaKnown RBP9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 TRPM1Q7Z4N2 1603 aa9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 DCDC2BA2VCK2 349 aa9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 EML1O00423 815 aa9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 BMP4P12644 408 aa9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 FGFR3P22607 806 aa9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 SCG3Q8WXD2 468 aaKnown RBP9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 QRICH2Q9H0J4 1663 aa9.03□□□□□ -0.96
PRPF40A-210ENST00000489741 PARP4Q9UKK3 1724 aaKnown RBP9.02□□□□□ -0.96
PRPF40A-210ENST00000489741 CD163L1Q9NR16 1453 aa9.02□□□□□ -0.96
PRPF40A-210ENST00000489741 NFAT5O94916 1531 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 PIK3C2AO00443 1686 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 EXOC5O00471 708 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 KCNQ2O43526 872 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 LGR5O75473 907 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 CELA2BP08218 269 aaPredicted RBP9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 RHPN1Q8TCX5 695 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 CCDC97Q96F63 343 aaPredicted RBP9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 CARD11Q9BXL7 1154 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 SLC12A5Q9H2X9 1139 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 SPON1Q9HCB6 807 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 NDFIP2Q9NV92 336 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 HCN4Q9Y3Q4 1203 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 PEAK1Q9H792 1746 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 UTRNP46939 3433 aa9.02□□□□□ -0.97
PRPF40A-210ENST00000489741 KHNYNO15037 678 aaKnown RBP9.01□□□□□ -0.97
PRPF40A-210ENST00000489741 HIRAP54198 1017 aaPredicted RBP9.01□□□□□ -0.97
PRPF40A-210ENST00000489741 LRRC69Q6ZNQ3 347 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms