RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ABCB6Q9NP58 842 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 OSGEPQ9NPF4 335 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 PPP4R2Q9NY27 417 aa10.55□□□□□ -0.72
USP40-213ENST00000483216 TMEM238LA0A1B0GVL6 79 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 GIPC1O14908 333 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 FSCN2O14926 492 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 APBA3O96018 575 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 CDC25BP30305 580 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 MFAP1P55081 439 aaKnown RBP10.54□□□□□ -0.72
USP40-213ENST00000483216 FBXO33Q7Z6M2 555 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 KLHL23Q8NBE8 558 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 FRMD6Q96NE9 622 aa10.54□□□□□ -0.72
USP40-213ENST00000483216 TM4SF5O14894 197 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 IKBKEQ14164 716 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 IGF2-ASQ6U949 168 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 GALNT11Q8NCW6 608 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 SRCIN1Q9C0H9 1055 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 CLEC4MQ9H2X3 399 aaPredicted RBP10.53□□□□□ -0.72
USP40-213ENST00000483216 SEC31BQ9NQW1 1179 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 SPG7Q9UQ90 795 aa10.53□□□□□ -0.72
USP40-213ENST00000483216 C9orf172C9J069 976 aa10.52□□□□□ -0.73
USP40-213ENST00000483216 SELPP16109 830 aa10.52□□□□□ -0.73
USP40-213ENST00000483216 NXPE4Q6UWF7 544 aa10.52□□□□□ -0.73
USP40-213ENST00000483216 LENG1Q96BZ8 264 aaPredicted RBP10.52□□□□□ -0.73
USP40-213ENST00000483216 SOX1O00570 391 aaPredicted RBP10.51□□□□□ -0.73
USP40-213ENST00000483216 ESRRAP11474 423 aaPredicted RBP10.51□□□□□ -0.73
USP40-213ENST00000483216 ARL4DP49703 201 aa10.51□□□□□ -0.73
USP40-213ENST00000483216 ZNF576Q9H609 170 aa10.51□□□□□ -0.73
USP40-213ENST00000483216 SOX17Q9H6I2 414 aaPredicted RBP10.51□□□□□ -0.73
USP40-213ENST00000483216 ZFYVE1Q9HBF4 777 aa10.51□□□□□ -0.73
USP40-213ENST00000483216 XRCC5P13010 732 aaKnown RBP10.5□□□□□ -0.73
USP40-213ENST00000483216 CD68P34810 354 aaPredicted RBP10.5□□□□□ -0.73
USP40-213ENST00000483216 PCDH1Q08174 1060 aa10.5□□□□□ -0.73
USP40-213ENST00000483216 SUZ12Q15022 739 aaKnown RBP10.5□□□□□ -0.73
USP40-213ENST00000483216 PLA2G4EQ3MJ16 856 aa10.5□□□□□ -0.73
USP40-213ENST00000483216 RPS26P11Q5JNZ5 115 aaPredicted RBP10.5□□□□□ -0.73
USP40-213ENST00000483216 SHISA2Q6UWI4 295 aa10.5□□□□□ -0.73
USP40-213ENST00000483216 CD163Q86VB7 1156 aa10.5□□□□□ -0.73
USP40-213ENST00000483216 CARD10Q9BWT7 1032 aa10.5□□□□□ -0.73
USP40-213ENST00000483216 OSBPL7Q9BZF2 842 aa10.5□□□□□ -0.73
USP40-213ENST00000483216 C1QTNF9BB2RNN3 333 aa10.49□□□□□ -0.73
USP40-213ENST00000483216 GNA15P30679 374 aa10.49□□□□□ -0.73
USP40-213ENST00000483216 CHRNA4P43681 627 aa10.49□□□□□ -0.73
USP40-213ENST00000483216 NRG1Q02297 640 aaPredicted RBP10.49□□□□□ -0.73
USP40-213ENST00000483216 C19orf57Q0VDD7 668 aa10.49□□□□□ -0.73
USP40-213ENST00000483216 SLC7A3Q8WY07 619 aa10.49□□□□□ -0.73
USP40-213ENST00000483216 KLHDC7BQ96G42 594 aa10.49□□□□□ -0.73
USP40-213ENST00000483216 DUSP9Q99956 384 aaKnown RBP10.49□□□□□ -0.73
USP40-213ENST00000483216 EIF4EBP3O60516 100 aaPredicted RBP10.48□□□□□ -0.73
USP40-213ENST00000483216 ITGB2P05107 769 aa10.48□□□□□ -0.73
USP40-213ENST00000483216 FCGRTP55899 365 aa10.48□□□□□ -0.73
USP40-213ENST00000483216 ZNF423Q2M1K9 1284 aa10.48□□□□□ -0.73
USP40-213ENST00000483216 DTHD1Q6ZMT9 781 aa10.48□□□□□ -0.73
USP40-213ENST00000483216 MRPL18Q9H0U6 180 aaKnown RBP10.48□□□□□ -0.73
USP40-213ENST00000483216 C12orf49Q9H741 205 aa10.48□□□□□ -0.73
USP40-213ENST00000483216 FOXD4L6Q3SYB3 417 aaPredicted RBP10.47□□□□□ -0.73
USP40-213ENST00000483216 HGSNATQ68CP4 663 aa10.47□□□□□ -0.73
USP40-213ENST00000483216 FOXD4L3Q6VB84 417 aaPredicted RBP10.47□□□□□ -0.73
USP40-213ENST00000483216 B3GALT4O96024 378 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 GSTT1P30711 240 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 ADGRE1Q14246 886 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 TMEM130Q8N3G9 435 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 KCNK4Q9NYG8 393 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 FAM8A1Q9UBU6 413 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 PARP2Q9UGN5 583 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 USP21Q9UK80 565 aa10.46□□□□□ -0.73
USP40-213ENST00000483216 C3orf58Q8NDZ4 430 aa10.45□□□□□ -0.74
USP40-213ENST00000483216 BCL2L13Q9BXK5 485 aa10.45□□□□□ -0.74
USP40-213ENST00000483216 AK5Q9Y6K8 562 aa10.45□□□□□ -0.74
USP40-213ENST00000483216 ADAM11O75078 769 aa10.44□□□□□ -0.74
USP40-213ENST00000483216 DAB2P98082 770 aa10.44□□□□□ -0.74
USP40-213ENST00000483216 TAGLNQ01995 201 aaKnown RBP10.44□□□□□ -0.74
USP40-213ENST00000483216 MBTPS1Q14703 1052 aa10.44□□□□□ -0.74
USP40-213ENST00000483216 FOXD4L4Q8WXT5 416 aaPredicted RBP10.44□□□□□ -0.74
USP40-213ENST00000483216 RNF19AQ9NV58 838 aa10.44□□□□□ -0.74
USP40-213ENST00000483216 DDX3YO15523 660 aaKnown RBP10.43□□□□□ -0.74
USP40-213ENST00000483216 EIF4BP23588 611 aaKnown RBP10.43□□□□□ -0.74
USP40-213ENST00000483216 XPCQ01831 940 aaPredicted RBP10.43□□□□□ -0.74
USP40-213ENST00000483216 GSTM4Q03013 218 aa10.43□□□□□ -0.74
USP40-213ENST00000483216 TMC4Q7Z404 712 aa10.43□□□□□ -0.74
USP40-213ENST00000483216 DDX54Q8TDD1 881 aaKnown RBP10.43□□□□□ -0.74
USP40-213ENST00000483216 ANKRD24Q8TF21 1146 aa10.43□□□□□ -0.74
USP40-213ENST00000483216 FAAP100Q0VG06 881 aa10.42□□□□□ -0.74
USP40-213ENST00000483216 ZNF326Q5BKZ1 582 aaKnown RBP10.42□□□□□ -0.74
USP40-213ENST00000483216 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.42□□□□□ -0.74
USP40-213ENST00000483216 PPM1HQ9ULR3 514 aa10.42□□□□□ -0.74
USP40-213ENST00000483216 AKAP2Q9Y2D5 859 aa10.42□□□□□ -0.74
USP40-213ENST00000483216 F8W735 103 aaPredicted RBP10.41□□□□□ -0.74
USP40-213ENST00000483216 WISP1O95388 367 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 IGHA1P01876 353 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 USP17L7P0C7H9 530 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 NLRP12P59046 1061 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 PSMD2Q13200 908 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 DUOXA2Q1HG44 320 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 TXNRD3Q86VQ6 643 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 NRSN2Q9GZP1 204 aa10.41□□□□□ -0.74
USP40-213ENST00000483216 GATA4P43694 442 aa10.4□□□□□ -0.74
USP40-213ENST00000483216 GIPC2Q8TF65 315 aa10.4□□□□□ -0.74
USP40-213ENST00000483216 WFDC12Q8WWY7 111 aa10.4□□□□□ -0.74
USP40-213ENST00000483216 AKTIPQ9H8T0 292 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms