RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 HMG20BQ9P0W2 317 aa10.02□□□□□ -0.81
SYNE1-225ENST00000481502 DUOX1Q9NRD9 1551 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 G3V3G9 751 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 FRAT2O75474 233 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-225ENST00000481502 GSPT1P15170 499 aaKnown RBP10.01□□□□□ -0.81
SYNE1-225ENST00000481502 MCAMP43121 646 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 GYG1P46976 350 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 RASGRF1Q13972 1273 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 DCAF8Q5TAQ9 597 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 STRIP1Q5VSL9 837 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 CERS3Q8IU89 383 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 RUFY2Q8WXA3 655 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 JDP2Q8WYK2 163 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.01□□□□□ -0.81
SYNE1-225ENST00000481502 BOLA2Q9H3K6 86 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 MYO3BQ8WXR4 1341 aa10.01□□□□□ -0.81
SYNE1-225ENST00000481502 TRIM6-TRIM34B2RNG4 842 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 SNAP23O00161 211 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 PPIP5K2O43314 1243 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 SDSP20132 328 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 IARSP41252 1262 aaKnown RBP10□□□□□ -0.81
SYNE1-225ENST00000481502 MAP3K12Q12852 859 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 UBE3CQ15386 1083 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 TXNRD3Q86VQ6 643 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 SLF2Q8IX21 1173 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 ZNRF3Q9ULT6 936 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 ZC3H4Q9UPT8 1303 aaKnown RBP10□□□□□ -0.81
SYNE1-225ENST00000481502 FER1L6Q2WGJ9 1857 aa10□□□□□ -0.81
SYNE1-225ENST00000481502 NFKBIEO00221 500 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 CDC45O75419 566 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 CAPN15O75808 1086 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 MAP4K4O95819 1239 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-225ENST00000481502 CYP2E1P05181 493 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-225ENST00000481502 ZAP70P43403 619 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 HDLBPQ00341 1268 aaKnown RBP9.99□□□□□ -0.81
SYNE1-225ENST00000481502 LARGE2Q8N3Y3 721 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 FAM163AQ96GL9 167 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-225ENST00000481502 SNRKQ9NRH2 765 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 MAST3O60307 1309 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 RAD50Q92878 1312 aa9.99□□□□□ -0.81
SYNE1-225ENST00000481502 USP17L3A6NCW0 530 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 USP17L4A6NCW7 530 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 WTIPA6NIX2 430 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-225ENST00000481502 GOLIM4O00461 696 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 LDHCP07864 332 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 LMNB1P20700 586 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 DSG3P32926 999 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 MFAP1P55081 439 aaKnown RBP9.98□□□□□ -0.81
SYNE1-225ENST00000481502 GSTO1P78417 241 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 TNIP1Q15025 636 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 TTLL5Q6EMB2 1281 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 OLFM4Q6UX06 510 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 ERICH6Q7L0X2 663 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 USP17L1Q7RTZ2 530 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 NIM1KQ8IY84 436 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 IL27Q8NEV9 243 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 RILPL2Q969X0 211 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 DNAJC2Q99543 621 aaKnown RBP9.98□□□□□ -0.81
SYNE1-225ENST00000481502 HELLSQ9NRZ9 838 aa9.98□□□□□ -0.81
SYNE1-225ENST00000481502 AKAP11Q9UKA4 1901 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 FZD9O00144 591 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 RIMBP2O15034 1052 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 RNF113AO15541 343 aaKnown RBP9.97□□□□□ -0.81
SYNE1-225ENST00000481502 ECE2O60344 883 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 VIL1P09327 827 aaKnown RBP9.97□□□□□ -0.81
SYNE1-225ENST00000481502 RPS12P25398 132 aaKnown RBP9.97□□□□□ -0.81
SYNE1-225ENST00000481502 CHMLP26374 656 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 KLRK1P26718 216 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 SCARF1Q14162 830 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 AOC3Q16853 763 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 SAMD1Q6SPF0 538 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-225ENST00000481502 AGBL3Q8NEM8 1001 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 FSD1Q9BTV5 496 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 LRP2BPQ9P2M1 347 aa9.97□□□□□ -0.81
SYNE1-225ENST00000481502 ZNF219Q9P2Y4 722 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-225ENST00000481502 CACNA1SQ13698 1873 aa9.96□□□□□ -0.81
SYNE1-225ENST00000481502 LDHBP07195 334 aaKnown RBP9.96□□□□□ -0.82
SYNE1-225ENST00000481502 MFSD14BQ5SR56 506 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 TSHZ3Q63HK5 1081 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 ARHGAP27Q6ZUM4 889 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 APPBP2Q92624 585 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 DPF2Q92785 391 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 BCL11AQ9H165 835 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 ZNF277Q9NRM2 450 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-225ENST00000481502 DIAPH3Q9NSV4 1193 aa9.96□□□□□ -0.82
SYNE1-225ENST00000481502 RPAP1Q9BWH6 1393 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-225ENST00000481502 REC8O95072 547 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 ADD2P35612 726 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 EIF6P56537 245 aaKnown RBP9.95□□□□□ -0.82
SYNE1-225ENST00000481502 GTF2IP78347 998 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 GPR162Q16538 588 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 MCMDC2Q4G0Z9 681 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 ZMYM1Q5SVZ6 1142 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 DACT2Q5SW24 774 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 SLC9C2Q5TAH2 1124 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 HHIPL2Q6UWX4 724 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 NSUN4Q96CB9 384 aaKnown RBP9.95□□□□□ -0.82
SYNE1-225ENST00000481502 ANTXR1Q9H6X2 564 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 DBNDD1Q9H9R9 158 aa9.95□□□□□ -0.82
SYNE1-225ENST00000481502 ABCF2Q9UG63 623 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms