RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 TRMT112Q9UI30 125 aaKnown RBP8.04□□□□□ -1.12
LDB3-206ENST00000477489 RABGEF1Q9UJ41 708 aa8.04□□□□□ -1.12
LDB3-206ENST00000477489 CHMP3Q9Y3E7 222 aa8.04□□□□□ -1.12
LDB3-206ENST00000477489 MROH5Q6ZUA9 1318 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 MED23Q9ULK4 1368 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 IGSF3O75054 1194 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 RPS6KA4O75676 772 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 PDIA4P13667 645 aaKnown RBP8.03□□□□□ -1.12
LDB3-206ENST00000477489 DDIT3P35638 169 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 NBR1Q14596 966 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 HLFQ16534 295 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 CCDC158Q5M9N0 1113 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 RNF20Q5VTR2 975 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 TSHZ3Q63HK5 1081 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 WNT2BQ93097 391 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 ACSBG1Q96GR2 724 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 NYXQ9GZU5 481 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 LSG1Q9H089 658 aaKnown RBP8.03□□□□□ -1.12
LDB3-206ENST00000477489 CCDC8Q9H0W5 538 aaPredicted RBP8.03□□□□□ -1.12
LDB3-206ENST00000477489 ZNF330Q9Y3S2 320 aaPredicted RBP8.03□□□□□ -1.12
LDB3-206ENST00000477489 RIC1Q4ADV7 1423 aa8.03□□□□□ -1.12
LDB3-206ENST00000477489 CASZ1Q86V15 1759 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 UTRNP46939 3433 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 MYH7P12883 1935 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 A0A1B0GUL7 405 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 ZFYP08048 801 aaPredicted RBP8.02□□□□□ -1.13
LDB3-206ENST00000477489 ZKSCAN1P17029 563 aaPredicted RBP8.02□□□□□ -1.13
LDB3-206ENST00000477489 ITGA6P23229 1130 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 TSGA10IPQ3SY00 556 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 CCDC152Q4G0S7 254 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 SLC27A3Q5K4L6 730 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 THSD4Q6ZMP0 1018 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 KBTBD3Q8NAB2 608 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 KLHDC4Q8TBB5 520 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 FAM89AQ96GI7 184 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 INTS4Q96HW7 963 aaKnown RBP8.02□□□□□ -1.13
LDB3-206ENST00000477489 FSD1Q9BTV5 496 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 HELLSQ9NRZ9 838 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 NARFQ9UHQ1 456 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 TBC1D2BQ9UPU7 963 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 RIPOR2Q9Y4F9 1068 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 CCDC171Q6TFL3 1326 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 UBN2Q6ZU65 1347 aa8.02□□□□□ -1.13
LDB3-206ENST00000477489 CEP350Q5VT06 3117 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 C4BP0C0L5 1744 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 NTSR2O95665 410 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 HSP90AA1P07900 732 aaKnown RBP8.01□□□□□ -1.13
LDB3-206ENST00000477489 UQCRFS1P1P0C7P4 283 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 PSMA5P28066 241 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 PTPN5P54829 565 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 NUCB2P80303 420 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 KRT32Q14532 448 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 TTF1Q15361 905 aaPredicted RBP8.01□□□□□ -1.13
LDB3-206ENST00000477489 SLC10A5Q5PT55 438 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 TMED8Q6PL24 325 aaPredicted RBP8.01□□□□□ -1.13
LDB3-206ENST00000477489 CWC27Q6UX04 472 aaKnown RBP8.01□□□□□ -1.13
LDB3-206ENST00000477489 FAM196AQ6ZSG2 479 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 MAP4K1Q92918 833 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 CDC5LQ99459 802 aaKnown RBP8.01□□□□□ -1.13
LDB3-206ENST00000477489 DBNDD2Q9BQY9 259 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 BOLA2Q9H3K6 86 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 RGPD3A6NKT7 1758 aaPredicted RBP8.01□□□□□ -1.13
LDB3-206ENST00000477489 RGPD4Q7Z3J3 1758 aa8.01□□□□□ -1.13
LDB3-206ENST00000477489 TRIM37O94972 964 aa8□□□□□ -1.13
LDB3-206ENST00000477489 PDE8BO95263 885 aa8□□□□□ -1.13
LDB3-206ENST00000477489 APBA3O96018 575 aa8□□□□□ -1.13
LDB3-206ENST00000477489 IFIT1P09914 478 aaKnown RBP8□□□□□ -1.13
LDB3-206ENST00000477489 GPTP24298 496 aa8□□□□□ -1.13
LDB3-206ENST00000477489 SSFA2P28290 1259 aa8□□□□□ -1.13
LDB3-206ENST00000477489 SLC4A3P48751 1232 aa8□□□□□ -1.13
LDB3-206ENST00000477489 NECTIN1Q15223 517 aa8□□□□□ -1.13
LDB3-206ENST00000477489 SF3B3Q15393 1217 aaKnown RBP8□□□□□ -1.13
LDB3-206ENST00000477489 PUM3Q15397 648 aaKnown RBP8□□□□□ -1.13
LDB3-206ENST00000477489 ATP2B3Q16720 1220 aa8□□□□□ -1.13
LDB3-206ENST00000477489 MCMDC2Q4G0Z9 681 aa8□□□□□ -1.13
LDB3-206ENST00000477489 SUSD4Q5VX71 490 aa8□□□□□ -1.13
LDB3-206ENST00000477489 USPL1Q5W0Q7 1092 aa8□□□□□ -1.13
LDB3-206ENST00000477489 ZSCAN25Q6NSZ9 544 aa8□□□□□ -1.13
LDB3-206ENST00000477489 LDHAL6AQ6ZMR3 332 aa8□□□□□ -1.13
LDB3-206ENST00000477489 CLEC17AQ6ZS10 378 aa8□□□□□ -1.13
LDB3-206ENST00000477489 VGLL2Q8N8G2 317 aa8□□□□□ -1.13
LDB3-206ENST00000477489 LINC00116Q8NCU8 138 aa8□□□□□ -1.13
LDB3-206ENST00000477489 LPIN2Q92539 896 aa8□□□□□ -1.13
LDB3-206ENST00000477489 JARID2Q92833 1246 aaPredicted RBP8□□□□□ -1.13
LDB3-206ENST00000477489 ARXQ96QS3 562 aa8□□□□□ -1.13
LDB3-206ENST00000477489 BCL11AQ9H165 835 aa8□□□□□ -1.13
LDB3-206ENST00000477489 ALDH8A1Q9H2A2 487 aaPredicted RBP8□□□□□ -1.13
LDB3-206ENST00000477489 CNNM1Q9NRU3 951 aa8□□□□□ -1.13
LDB3-206ENST00000477489 PAG1Q9NWQ8 432 aa8□□□□□ -1.13
LDB3-206ENST00000477489 TLR7Q9NYK1 1049 aaKnown RBP8□□□□□ -1.13
LDB3-206ENST00000477489 CCNL1Q9UK58 526 aaPredicted RBP8□□□□□ -1.13
LDB3-206ENST00000477489 NIP7Q9Y221 180 aaKnown RBP eCLIP8□□□□□ -1.13
LDB3-206ENST00000477489 RTCBQ9Y3I0 505 aaKnown RBP8□□□□□ -1.13
LDB3-206ENST00000477489 C4AP0C0L4 1744 aa8□□□□□ -1.13
LDB3-206ENST00000477489 DDX11L8A8MPP1 907 aa7.99□□□□□ -1.13
LDB3-206ENST00000477489 MAP3K7O43318 606 aa7.99□□□□□ -1.13
LDB3-206ENST00000477489 IGHMBP2P38935 993 aaKnown RBP7.99□□□□□ -1.13
LDB3-206ENST00000477489 NEK4P51957 841 aa7.99□□□□□ -1.13
LDB3-206ENST00000477489 NMIQ13287 307 aaPredicted RBP7.99□□□□□ -1.13
LDB3-206ENST00000477489 CUL4AQ13619 759 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms