RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-215ENST00000475470 SBF2Q86WG5 1849 aa18.21■□□□□ 0.51
RPUSD3-215ENST00000475470 F13A1P00488 732 aa18.21■□□□□ 0.51
RPUSD3-215ENST00000475470 PDIA4P13667 645 aaKnown RBP18.21■□□□□ 0.51
RPUSD3-215ENST00000475470 BSDC1Q9NW68 430 aaPredicted RBP18.21■□□□□ 0.51
RPUSD3-215ENST00000475470 ISY1Q9ULR0 285 aaKnown RBP18.21■□□□□ 0.51
RPUSD3-215ENST00000475470 LY75O60449 1722 aa18.21■□□□□ 0.51
RPUSD3-215ENST00000475470 HAND2P61296 217 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 EXOSC10Q01780 885 aaKnown RBP18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 MAP3K12Q12852 859 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 LARP1BQ659C4 914 aaKnown RBP18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 CAVIN1Q6NZI2 390 aaKnown RBP18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 TPTE2Q6XPS3 522 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 GTF3C6Q969F1 213 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 NLRP3Q96P20 1036 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 WWC3Q9ULE0 1092 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 MTMR6Q9Y217 621 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 MYO5AQ9Y4I1 1855 aaKnown RBP18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 PDCP20941 246 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 RFC4P35249 363 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 GPT2Q8TD30 523 aa18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 QTRT2Q9H974 415 aaKnown RBP18.2■□□□□ 0.5
RPUSD3-215ENST00000475470 TAF1LQ8IZX4 1826 aa18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 VPS37CA5D8V6 355 aaPredicted RBP18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 ZNF213O14771 459 aa18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 PHF14O94880 888 aa18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 TRAPPC3LQ5T215 181 aa18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 AMIGO3Q86WK7 504 aa18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 BCL11BQ9C0K0 894 aaPredicted RBP18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 COL4A1P02462 1669 aa18.19■□□□□ 0.5
RPUSD3-215ENST00000475470 TCRBV5S4A2TA0A5A2 114 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 MBD3O95983 291 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 AIDAQ96BJ3 306 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 NPHP1O15259 732 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 APPP05067 770 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 FAM196AQ6ZSG2 479 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 MAGEB6Q8N7X4 407 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 CELF1Q92879 486 aaKnown RBP18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 GDPD2Q9HCC8 539 aa18.18■□□□□ 0.5
RPUSD3-215ENST00000475470 MRE11P49959 708 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 UBE4AQ14139 1066 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 CHST3Q7LGC8 479 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 AGXT2Q9BYV1 514 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 MINPP1Q9UNW1 487 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 CASZ1Q86V15 1759 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 TAF1P21675 1872 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 C4BP0C0L5 1744 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 APOBRQ0VD83 1088 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 USP48Q86UV5 1035 aa18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 GNL3LQ9NVN8 582 aaKnown RBP18.17■□□□□ 0.5
RPUSD3-215ENST00000475470 PFKFB2O60825 505 aa18.16■□□□□ 0.5
RPUSD3-215ENST00000475470 CCDC24Q8N4L8 307 aa18.16■□□□□ 0.5
RPUSD3-215ENST00000475470 COL24A1Q17RW2 1714 aa18.16■□□□□ 0.5
RPUSD3-215ENST00000475470 XRCC6P12956 609 aaKnown RBP eCLIP18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 RPS8P62241 208 aaKnown RBP18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 SCRN1Q12765 414 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 NCOA7Q8NI08 942 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 STRBPQ96SI9 672 aaKnown RBP18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 CNPY2Q9Y2B0 182 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 CAVIN4Q5BKX8 364 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 RALYLQ86SE5 291 aaKnown RBP18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 GAS2L3Q86XJ1 694 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 GRPEL1Q9HAV7 217 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 LRP2BPQ9P2M1 347 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 NAP1L2Q9ULW6 460 aaPredicted RBP18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 TCHHQ07283 1943 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 DOCK2Q92608 1830 aa18.15■□□□□ 0.5
RPUSD3-215ENST00000475470 JAK2O60674 1132 aa18.14■□□□□ 0.5
RPUSD3-215ENST00000475470 MCM5P33992 734 aa18.14■□□□□ 0.5
RPUSD3-215ENST00000475470 GYG1P46976 350 aa18.14■□□□□ 0.5
RPUSD3-215ENST00000475470 ZSCAN23Q3MJ62 389 aa18.14■□□□□ 0.5
RPUSD3-215ENST00000475470 LRRC4BQ9NT99 713 aa18.14■□□□□ 0.5
RPUSD3-215ENST00000475470 IQSEC3Q9UPP2 1182 aaPredicted RBP18.14■□□□□ 0.5
RPUSD3-215ENST00000475470 VPS37DQ86XT2 251 aa18.14■□□□□ 0.49
RPUSD3-215ENST00000475470 TMEM87AQ8NBN3 555 aa18.14■□□□□ 0.49
RPUSD3-215ENST00000475470 LLPHQ9BRT6 129 aaKnown RBP18.14■□□□□ 0.49
RPUSD3-215ENST00000475470 RBM27Q9P2N5 1060 aaKnown RBP18.14■□□□□ 0.49
RPUSD3-215ENST00000475470 NSFL1CQ9UNZ2 370 aaKnown RBP18.14■□□□□ 0.49
RPUSD3-215ENST00000475470 ZNF804BA4D1E1 1349 aa18.14■□□□□ 0.49
RPUSD3-215ENST00000475470 FBXL16Q8N461 479 aa18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 C4AP0C0L4 1744 aa18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 WTIPA6NIX2 430 aaPredicted RBP18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 PRC1O43663 620 aa18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 MBD4O95243 580 aa18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 TRDNQ13061 729 aa18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 CDC37L1Q7L3B6 337 aa18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 ZNF274Q96GC6 653 aaPredicted RBP18.13■□□□□ 0.49
RPUSD3-215ENST00000475470 A0A1B0GUL6 1792 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 PATL2C9JE40 543 aaKnown RBP18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 ADRA2BP18089 450 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 ZNF445P59923 1031 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 DNM1Q05193 864 aaKnown RBP18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 MB21D2Q8IYB1 491 aaPredicted RBP18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 FAM184AQ8NB25 1140 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 CHMP4CQ96CF2 233 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 DDX11Q96FC9 970 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 FIBPO43427 364 aa18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 GADD45BO75293 160 aaPredicted RBP18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 PDIA3P30101 505 aaKnown RBP18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 CCT2P78371 535 aaKnown RBP18.12■□□□□ 0.49
RPUSD3-215ENST00000475470 CSPP1Q1MSJ5 1256 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms