RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 KLF18A0A0U1RQI7 1052 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 PDE8BO95263 885 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 LLPHQ9BRT6 129 aaKnown RBP22.43■■□□□ 1.18
VIM-203ENST00000469543 DNAJC25Q9H1X3 360 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 WWC3Q9ULE0 1092 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 SALL1Q9NSC2 1324 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 ZNF213O14771 459 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 PDIA4P13667 645 aaKnown RBP22.43■■□□□ 1.18
VIM-203ENST00000469543 ZSCAN16Q9H4T2 348 aaPredicted RBP22.43■■□□□ 1.18
VIM-203ENST00000469543 HPS5Q9UPZ3 1129 aa22.43■■□□□ 1.18
VIM-203ENST00000469543 FBXW7Q969H0 707 aa22.42■■□□□ 1.18
VIM-203ENST00000469543 ZNF274Q96GC6 653 aaPredicted RBP22.42■■□□□ 1.18
VIM-203ENST00000469543 CBX8Q9HC52 389 aa22.42■■□□□ 1.18
VIM-203ENST00000469543 ITGB4P16144 1822 aa22.42■■□□□ 1.18
VIM-203ENST00000469543 NWD2Q9ULI1 1742 aa22.42■■□□□ 1.18
VIM-203ENST00000469543 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.42■■□□□ 1.18
VIM-203ENST00000469543 STK11IPQ8N1F8 1099 aa22.42■■□□□ 1.18
VIM-203ENST00000469543 CLSTN2Q9H4D0 955 aa22.42■■□□□ 1.18
VIM-203ENST00000469543 CARMIL3Q8ND23 1372 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 SUSD4Q5VX71 490 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 MB21D2Q8IYB1 491 aaPredicted RBP22.41■■□□□ 1.18
VIM-203ENST00000469543 FAM200AQ8TCP9 573 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 CFAP45Q9UL16 551 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 WTIPA6NIX2 430 aaPredicted RBP22.41■■□□□ 1.18
VIM-203ENST00000469543 CCDC144CPQ8IYA2 1237 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 AIFM3Q96NN9 605 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 GOLGB1Q14789 3259 aaKnown RBP22.41■■□□□ 1.18
VIM-203ENST00000469543 ZNF532Q9HCE3 1301 aa22.41■■□□□ 1.18
VIM-203ENST00000469543 MYO5AQ9Y4I1 1855 aaKnown RBP22.4■■□□□ 1.18
VIM-203ENST00000469543 TBC1D10CQ8IV04 446 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 CCAR1Q8IX12 1150 aaKnown RBP22.4■■□□□ 1.18
VIM-203ENST00000469543 GOLGA8BA8MQT2 603 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 ZFYP08048 801 aaPredicted RBP22.4■■□□□ 1.18
VIM-203ENST00000469543 ADD2P35612 726 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 KCNQ4P56696 695 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 NAA16Q6N069 864 aaPredicted RBP22.4■■□□□ 1.18
VIM-203ENST00000469543 SMIM5Q71RC9 77 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 CTNNA3Q9UI47 895 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 FBXO3Q9UK99 471 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 CDHR2Q9BYE9 1310 aa22.4■■□□□ 1.18
VIM-203ENST00000469543 MCM5P33992 734 aa22.39■■□□□ 1.18
VIM-203ENST00000469543 HMGN5P82970 282 aaKnown RBP22.39■■□□□ 1.18
VIM-203ENST00000469543 KCNF1Q9H3M0 494 aa22.39■■□□□ 1.18
VIM-203ENST00000469543 UBE2Q2LH0YL09 131 aa22.39■■□□□ 1.17
VIM-203ENST00000469543 PDE8AO60658 829 aa22.39■■□□□ 1.17
VIM-203ENST00000469543 ME1P48163 572 aa22.39■■□□□ 1.17
VIM-203ENST00000469543 KIAA2012Q0VF49 1180 aa22.39■■□□□ 1.17
VIM-203ENST00000469543 CYB5R4Q7L1T6 521 aa22.39■■□□□ 1.17
VIM-203ENST00000469543 RBM10P98175 930 aaKnown RBP22.38■■□□□ 1.17
VIM-203ENST00000469543 DDX19AQ9NUU7 478 aaKnown RBP22.38■■□□□ 1.17
VIM-203ENST00000469543 NRBP1Q9UHY1 535 aa22.38■■□□□ 1.17
VIM-203ENST00000469543 RCOR1Q9UKL0 485 aa22.38■■□□□ 1.17
VIM-203ENST00000469543 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.38■■□□□ 1.17
VIM-203ENST00000469543 SNW1Q13573 536 aaKnown RBP22.38■■□□□ 1.17
VIM-203ENST00000469543 RALYLQ86SE5 291 aaKnown RBP22.38■■□□□ 1.17
VIM-203ENST00000469543 NCOA7Q8NI08 942 aa22.38■■□□□ 1.17
VIM-203ENST00000469543 IQSEC3Q9UPP2 1182 aaPredicted RBP22.38■■□□□ 1.17
VIM-203ENST00000469543 MYL10Q9BUA6 226 aa22.37■■□□□ 1.17
VIM-203ENST00000469543 SLIT2O94813 1529 aa22.37■■□□□ 1.17
VIM-203ENST00000469543 B4E1Z4 1266 aa22.37■■□□□ 1.17
VIM-203ENST00000469543 ATP6V1AP38606 617 aa22.37■■□□□ 1.17
VIM-203ENST00000469543 DNTTIP2Q5QJE6 756 aaKnown RBP22.37■■□□□ 1.17
VIM-203ENST00000469543 INTS5Q6P9B9 1019 aaKnown RBP22.37■■□□□ 1.17
VIM-203ENST00000469543 ZNF34Q8IZ26 560 aa22.37■■□□□ 1.17
VIM-203ENST00000469543 CLIC4Q9Y696 253 aa22.37■■□□□ 1.17
VIM-203ENST00000469543 ZNF165P49910 485 aa22.36■■□□□ 1.17
VIM-203ENST00000469543 SASS6Q6UVJ0 657 aa22.36■■□□□ 1.17
VIM-203ENST00000469543 AKAP11Q9UKA4 1901 aa22.36■■□□□ 1.17
VIM-203ENST00000469543 PYCARDQ9ULZ3 195 aa22.36■■□□□ 1.17
VIM-203ENST00000469543 PDE6AP16499 860 aa22.36■■□□□ 1.17
VIM-203ENST00000469543 LRRFIP1Q32MZ4 808 aaKnown RBP22.36■■□□□ 1.17
VIM-203ENST00000469543 RBM43Q6ZSC3 357 aaKnown RBP22.36■■□□□ 1.17
VIM-203ENST00000469543 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.36■■□□□ 1.17
VIM-203ENST00000469543 ORC3Q9UBD5 711 aaPredicted RBP22.36■■□□□ 1.17
VIM-203ENST00000469543 A0A1B0GVL5 298 aa22.35■■□□□ 1.17
VIM-203ENST00000469543 EVCP57679 992 aa22.35■■□□□ 1.17
VIM-203ENST00000469543 NOLC1Q14978 699 aaKnown RBP eCLIP22.35■■□□□ 1.17
VIM-203ENST00000469543 DISP2A7MBM2 1401 aa22.35■■□□□ 1.17
VIM-203ENST00000469543 KIF28PB7ZC32 967 aa22.35■■□□□ 1.17
VIM-203ENST00000469543 IL6STP40189 918 aaPredicted RBP22.35■■□□□ 1.17
VIM-203ENST00000469543 RASGRF1Q13972 1273 aa22.35■■□□□ 1.17
VIM-203ENST00000469543 C11orf57Q6ZUT1 292 aaPredicted RBP22.35■■□□□ 1.17
VIM-203ENST00000469543 PCDHA7Q9UN72 937 aa22.35■■□□□ 1.17
VIM-203ENST00000469543 CPLX1O14810 134 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 CRKLP46109 303 aaKnown RBP22.34■■□□□ 1.17
VIM-203ENST00000469543 BCAMP50895 628 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 PHKBQ93100 1093 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 KCNQ2O43526 872 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 PRKAB2O43741 272 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 PTGS1P23219 599 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 ITPK1Q13572 414 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 MAGEB6Q8N7X4 407 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 C8orf76Q96K31 380 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 TACC3Q9Y6A5 838 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 EIF5P55010 431 aaKnown RBP22.34■■□□□ 1.17
VIM-203ENST00000469543 CTDSPL2Q05D32 466 aa22.34■■□□□ 1.17
VIM-203ENST00000469543 TCRBV5S4A2TA0A5A2 114 aa22.33■■□□□ 1.16
VIM-203ENST00000469543 NUTM2BA6NNL0 878 aaPredicted RBP22.33■■□□□ 1.16
VIM-203ENST00000469543 NUTM2EB1AL46 878 aaPredicted RBP22.33■■□□□ 1.16
VIM-203ENST00000469543 LRMPQ12912 555 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms