RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 MINPP1Q9UNW1 487 aa21.72■■□□□ 1.07
COL9A3-205ENST00000466192 GOLGA6L3A6NEY3 463 aa21.72■■□□□ 1.07
COL9A3-205ENST00000466192 GPAA1O43292 621 aa21.72■■□□□ 1.07
COL9A3-205ENST00000466192 PRPF40AO75400 957 aaKnown RBP21.72■■□□□ 1.07
COL9A3-205ENST00000466192 ANKRD1Q15327 319 aa21.72■■□□□ 1.07
COL9A3-205ENST00000466192 WWC3Q9ULE0 1092 aa21.72■■□□□ 1.07
COL9A3-205ENST00000466192 ADRA2BP18089 450 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 NFIXQ14938 502 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 UBE3CQ15386 1083 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 SLC27A3Q5K4L6 730 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 NECAB1Q8N987 351 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 RTN4Q9NQC3 1192 aaKnown RBP21.71■■□□□ 1.07
COL9A3-205ENST00000466192 SMC3Q9UQE7 1217 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 DTNBO60941 627 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 PDE6AP16499 860 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 KLHL40Q2TBA0 621 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 ZNF532Q9HCE3 1301 aa21.71■■□□□ 1.07
COL9A3-205ENST00000466192 CARMIL3Q8ND23 1372 aa21.7■■□□□ 1.07
COL9A3-205ENST00000466192 TCRBV5S4A2TA0A5A2 114 aa21.7■■□□□ 1.06
COL9A3-205ENST00000466192 FSD2A1L4K1 749 aa21.7■■□□□ 1.06
COL9A3-205ENST00000466192 E7EWF7 191 aa21.7■■□□□ 1.06
COL9A3-205ENST00000466192 RPS8P62241 208 aaKnown RBP21.7■■□□□ 1.06
COL9A3-205ENST00000466192 L1TD1Q5T7N2 865 aaKnown RBP21.7■■□□□ 1.06
COL9A3-205ENST00000466192 WDR33Q9C0J8 1336 aaKnown RBP21.69■■□□□ 1.06
COL9A3-205ENST00000466192 FGAP02671 866 aa21.69■■□□□ 1.06
COL9A3-205ENST00000466192 TM4SF1P30408 202 aa21.69■■□□□ 1.06
COL9A3-205ENST00000466192 UBE4AQ14139 1066 aa21.69■■□□□ 1.06
COL9A3-205ENST00000466192 FOXD4L6Q3SYB3 417 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-205ENST00000466192 FOXD4L3Q6VB84 417 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-205ENST00000466192 TCHHQ07283 1943 aa21.69■■□□□ 1.06
COL9A3-205ENST00000466192 Q6ZUG5 572 aa21.68■■□□□ 1.06
COL9A3-205ENST00000466192 BRPF3Q9ULD4 1205 aa21.68■■□□□ 1.06
COL9A3-205ENST00000466192 HMGB1P09429 215 aaKnown RBP21.68■■□□□ 1.06
COL9A3-205ENST00000466192 NCLP19338 710 aaKnown RBP21.68■■□□□ 1.06
COL9A3-205ENST00000466192 GYG1P46976 350 aa21.68■■□□□ 1.06
COL9A3-205ENST00000466192 CTNNA3Q9UI47 895 aa21.68■■□□□ 1.06
COL9A3-205ENST00000466192 ZNF804BA4D1E1 1349 aa21.68■■□□□ 1.06
COL9A3-205ENST00000466192 NPHP1O15259 732 aa21.67■■□□□ 1.06
COL9A3-205ENST00000466192 GJB2P29033 226 aa21.67■■□□□ 1.06
COL9A3-205ENST00000466192 RBM6P78332 1123 aaKnown RBP21.67■■□□□ 1.06
COL9A3-205ENST00000466192 DHX32Q7L7V1 743 aaKnown RBP21.67■■□□□ 1.06
COL9A3-205ENST00000466192 SYT1P21579 422 aa21.67■■□□□ 1.06
COL9A3-205ENST00000466192 PROM2Q8N271 834 aa21.67■■□□□ 1.06
COL9A3-205ENST00000466192 LRRC2Q9BYS8 371 aa21.67■■□□□ 1.06
COL9A3-205ENST00000466192 IQSEC3Q9UPP2 1182 aaPredicted RBP21.67■■□□□ 1.06
COL9A3-205ENST00000466192 MYH13Q9UKX3 1938 aa21.66■■□□□ 1.06
COL9A3-205ENST00000466192 GYS1P13807 737 aa21.66■■□□□ 1.06
COL9A3-205ENST00000466192 MAP3K12Q12852 859 aa21.66■■□□□ 1.06
COL9A3-205ENST00000466192 MAGEB6Q8N7X4 407 aa21.66■■□□□ 1.06
COL9A3-205ENST00000466192 STX6O43752 255 aa21.65■■□□□ 1.06
COL9A3-205ENST00000466192 HAND2P61296 217 aa21.65■■□□□ 1.06
COL9A3-205ENST00000466192 EXOSC10Q01780 885 aaKnown RBP21.65■■□□□ 1.06
COL9A3-205ENST00000466192 IMMTQ16891 758 aaKnown RBP21.65■■□□□ 1.06
COL9A3-205ENST00000466192 ZNF772Q68DY9 489 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-205ENST00000466192 CNBD1Q8NA66 436 aa21.65■■□□□ 1.06
COL9A3-205ENST00000466192 TXNRD1Q16881 649 aa21.64■■□□□ 1.06
COL9A3-205ENST00000466192 COL1A1P02452 1464 aaPredicted RBP21.64■■□□□ 1.06
COL9A3-205ENST00000466192 ZSCAN22P10073 491 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-205ENST00000466192 STK3Q13188 491 aa21.64■■□□□ 1.05
COL9A3-205ENST00000466192 CAVIN1Q6NZI2 390 aaKnown RBP21.64■■□□□ 1.05
COL9A3-205ENST00000466192 GPT2Q8TD30 523 aa21.64■■□□□ 1.05
COL9A3-205ENST00000466192 BRF1Q92994 677 aa21.64■■□□□ 1.05
COL9A3-205ENST00000466192 FAM84BQ96KN1 310 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-205ENST00000466192 XRCC6P12956 609 aaKnown RBP eCLIP21.63■■□□□ 1.05
COL9A3-205ENST00000466192 PRR5LQ6MZQ0 368 aa21.63■■□□□ 1.05
COL9A3-205ENST00000466192 STRBPQ96SI9 672 aaKnown RBP21.63■■□□□ 1.05
COL9A3-205ENST00000466192 KLRK1P26718 216 aa21.63■■□□□ 1.05
COL9A3-205ENST00000466192 CAVIN4Q5BKX8 364 aa21.63■■□□□ 1.05
COL9A3-205ENST00000466192 AIDAQ96BJ3 306 aa21.63■■□□□ 1.05
COL9A3-205ENST00000466192 AGXT2Q9BYV1 514 aa21.63■■□□□ 1.05
COL9A3-205ENST00000466192 GNL3LQ9NVN8 582 aaKnown RBP21.63■■□□□ 1.05
COL9A3-205ENST00000466192 GAS2L3Q86XJ1 694 aa21.62■■□□□ 1.05
COL9A3-205ENST00000466192 CHD4Q14839 1912 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 FGD1P98174 961 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 CHST3Q7LGC8 479 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 GTF3C6Q969F1 213 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 ANKRD2Q9GZV1 360 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 GDPD2Q9HCC8 539 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 ZNF213O14771 459 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 LRP2BPQ9P2M1 347 aa21.61■■□□□ 1.05
COL9A3-205ENST00000466192 MBD4O95243 580 aa21.6■■□□□ 1.05
COL9A3-205ENST00000466192 FBXO33Q7Z6M2 555 aa21.6■■□□□ 1.05
COL9A3-205ENST00000466192 VPS37DQ86XT2 251 aa21.6■■□□□ 1.05
COL9A3-205ENST00000466192 NBPF3Q9H094 633 aa21.6■■□□□ 1.05
COL9A3-205ENST00000466192 CACNA1SQ13698 1873 aa21.6■■□□□ 1.05
COL9A3-205ENST00000466192 APPP05067 770 aa21.6■■□□□ 1.05
COL9A3-205ENST00000466192 F13A1P00488 732 aa21.59■■□□□ 1.05
COL9A3-205ENST00000466192 SERPINB2P05120 415 aa21.59■■□□□ 1.05
COL9A3-205ENST00000466192 MRE11P49959 708 aa21.59■■□□□ 1.05
COL9A3-205ENST00000466192 SLC51AQ86UW1 340 aa21.59■■□□□ 1.05
COL9A3-205ENST00000466192 ARMT1Q9H993 441 aa21.59■■□□□ 1.05
COL9A3-205ENST00000466192 GRPEL1Q9HAV7 217 aa21.59■■□□□ 1.05
COL9A3-205ENST00000466192 ISY1Q9ULR0 285 aaKnown RBP21.59■■□□□ 1.05
COL9A3-205ENST00000466192 NSFL1CQ9UNZ2 370 aaKnown RBP21.59■■□□□ 1.05
COL9A3-205ENST00000466192 APOBRQ0VD83 1088 aa21.58■■□□□ 1.05
COL9A3-205ENST00000466192 GRAPQ13588 217 aa21.58■■□□□ 1.05
COL9A3-205ENST00000466192 GRAPLQ8TC17 118 aaPredicted RBP21.58■■□□□ 1.05
COL9A3-205ENST00000466192 ABCF2Q9UG63 623 aa21.58■■□□□ 1.05
COL9A3-205ENST00000466192 MTMR6Q9Y217 621 aa21.58■■□□□ 1.05
COL9A3-205ENST00000466192 MB21D2Q8IYB1 491 aaPredicted RBP21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms