RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 TUBB4AP04350 444 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 ATP7BP35670 1465 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 POLR3GO15318 223 aaPredicted RBP16.87■□□□□ 0.29
PTPRU-205ENST00000460170 EXOC1Q9NV70 894 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 IBTKQ9P2D0 1353 aaPredicted RBP16.87■□□□□ 0.29
PTPRU-205ENST00000460170 SPDYE4A6NLX3 237 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 KCNQ3O43525 872 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 A1BGP04217 495 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 SF3B2Q13435 895 aaKnown RBP16.87■□□□□ 0.29
PTPRU-205ENST00000460170 XAGE2Q96GT9 111 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 ZNF594Q96JF6 807 aaPredicted RBP16.87■□□□□ 0.29
PTPRU-205ENST00000460170 IFNKQ9P0W0 207 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 LRRC27Q9C0I9 530 aa16.87■□□□□ 0.29
PTPRU-205ENST00000460170 TMEM63CQ9P1W3 806 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 CFAP74Q9C0B2 1584 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 MBD4O95243 580 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 HLA-DOAP06340 250 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 ATP5JP18859 108 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 ITGA6P23229 1130 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 ZSWIM4Q9H7M6 989 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 NCOA5Q9HCD5 579 aaKnown RBP16.86■□□□□ 0.29
PTPRU-205ENST00000460170 PALD1Q9ULE6 856 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 CALML3P27482 149 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 LEO1Q8WVC0 666 aaPredicted RBP16.86■□□□□ 0.29
PTPRU-205ENST00000460170 NEURL1BA8MQ27 555 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 TRIM21P19474 475 aaKnown RBP16.86■□□□□ 0.29
PTPRU-205ENST00000460170 ALS2CR12Q96Q35 445 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 CLSTN2Q9H4D0 955 aa16.86■□□□□ 0.29
PTPRU-205ENST00000460170 ZNF853P0CG23 659 aa16.85■□□□□ 0.29
PTPRU-205ENST00000460170 BEND3Q5T5X7 828 aa16.85■□□□□ 0.29
PTPRU-205ENST00000460170 HEATR3Q7Z4Q2 680 aa16.85■□□□□ 0.29
PTPRU-205ENST00000460170 NDUFB9Q9Y6M9 179 aa16.85■□□□□ 0.29
PTPRU-205ENST00000460170 KRI1Q8N9T8 703 aaKnown RBP16.85■□□□□ 0.29
PTPRU-205ENST00000460170 TMEM87BQ96K49 555 aa16.85■□□□□ 0.29
PTPRU-205ENST00000460170 DNA2P51530 1060 aa16.85■□□□□ 0.29
PTPRU-205ENST00000460170 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.85■□□□□ 0.29
PTPRU-205ENST00000460170 B4E1Z4 1266 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 PSMA7O14818 248 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 SLU7O95391 586 aaKnown RBP16.84■□□□□ 0.29
PTPRU-205ENST00000460170 KRT2P35908 639 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 GPAA1O43292 621 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 EHBP1Q8NDI1 1231 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 ELP1O95163 1332 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 ANGEL1Q9UNK9 670 aaKnown RBP16.84■□□□□ 0.29
PTPRU-205ENST00000460170 DTNBO60941 627 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 WWC2Q6AWC2 1192 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 CDC37L1Q7L3B6 337 aa16.84■□□□□ 0.29
PTPRU-205ENST00000460170 EAF2Q96CJ1 260 aaPredicted RBP16.84■□□□□ 0.29
PTPRU-205ENST00000460170 OSBPL3Q9H4L5 887 aa16.83■□□□□ 0.29
PTPRU-205ENST00000460170 AKR1B10O60218 316 aa16.83■□□□□ 0.29
PTPRU-205ENST00000460170 TCERG1LQ5VWI1 586 aa16.83■□□□□ 0.29
PTPRU-205ENST00000460170 NYXQ9GZU5 481 aa16.83■□□□□ 0.29
PTPRU-205ENST00000460170 STAP2Q9UGK3 403 aa16.83■□□□□ 0.29
PTPRU-205ENST00000460170 KDRP35968 1356 aa16.83■□□□□ 0.29
PTPRU-205ENST00000460170 SH3TC1Q8TE82 1336 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 TAF3Q5VWG9 929 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 TPTE2Q6XPS3 522 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.83■□□□□ 0.28
PTPRU-205ENST00000460170 MYL5Q02045 173 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 ME3Q16798 604 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 ANO1Q5XXA6 986 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 MCM9Q9NXL9 1143 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 KIF1BO60333 1816 aa16.83■□□□□ 0.28
PTPRU-205ENST00000460170 PUM3Q15397 648 aaKnown RBP16.83■□□□□ 0.28
PTPRU-205ENST00000460170 ST5P78524 1137 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 TAX1BP1Q86VP1 789 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 ZKSCAN3Q9BRR0 538 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 SRRTQ9BXP5 876 aaKnown RBP16.82■□□□□ 0.28
PTPRU-205ENST00000460170 NEFHP12036 1026 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 NAPAP54920 295 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 EDC3Q96F86 508 aaKnown RBP16.82■□□□□ 0.28
PTPRU-205ENST00000460170 CYLC1P35663 651 aaPredicted RBP16.82■□□□□ 0.28
PTPRU-205ENST00000460170 PTH1RQ03431 593 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 RILPL1Q5EBL4 403 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 JADE2Q9NQC1 790 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 BCORL1Q5H9F3 1711 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 SHROOM2Q13796 1616 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 CCDC175P0C221 793 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 PKP1Q13835 747 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 KRT222Q8N1A0 295 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 EHMT1Q9H9B1 1298 aa16.82■□□□□ 0.28
PTPRU-205ENST00000460170 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTPRU-205ENST00000460170 IGSF1Q8N6C5 1336 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 PDE8AO60658 829 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 JAK2O60674 1132 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 MATR3P43243 847 aaKnown RBP eCLIP16.81■□□□□ 0.28
PTPRU-205ENST00000460170 HSPA2P54652 639 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 CABP5Q9NP86 173 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 BTG4Q9NY30 223 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 EFCAB6Q5THR3 1501 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 IQGAP3Q86VI3 1631 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 STX17P56962 302 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 ASIC1P78348 528 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 DSCC1Q9BVC3 393 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 NAA15Q9BXJ9 866 aaKnown RBP16.81■□□□□ 0.28
PTPRU-205ENST00000460170 CBX8Q9HC52 389 aa16.81■□□□□ 0.28
PTPRU-205ENST00000460170 IQUBQ8NA54 791 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 PODXL2Q9NZ53 605 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 PARP10Q53GL7 1025 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 OTUD7BQ6GQQ9 843 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms