RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 CLIP2Q9UDT6 1046 aa11.05□□□□□ -0.64
KLHL3-202ENST00000447439 RCOR1Q9UKL0 485 aa11.05□□□□□ -0.64
KLHL3-202ENST00000447439 PCDHA7Q9UN72 937 aa11.05□□□□□ -0.64
KLHL3-202ENST00000447439 PARP4Q9UKK3 1724 aaKnown RBP11.05□□□□□ -0.64
KLHL3-202ENST00000447439 COL5A2P05997 1499 aaPredicted RBP11.05□□□□□ -0.64
KLHL3-202ENST00000447439 KIF28PB7ZC32 967 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 BIN1O00499 593 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 GPAA1O43292 621 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 IDH1O75874 414 aaKnown RBP11.04□□□□□ -0.64
KLHL3-202ENST00000447439 CIAO1O76071 339 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 APPP05067 770 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 ITGA6P23229 1130 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 LDHAL6AQ6ZMR3 332 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 PLA2G4DQ86XP0 818 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 CACTINQ8WUQ7 758 aaKnown RBP11.04□□□□□ -0.64
KLHL3-202ENST00000447439 MYL10Q9BUA6 226 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 HPS5Q9UPZ3 1129 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 GOLGA6L6A8MZA4 724 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 RIOK3O14730 519 aaKnown RBP11.04□□□□□ -0.64
KLHL3-202ENST00000447439 ATP2B3Q16720 1220 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 IMMTQ16891 758 aaKnown RBP11.04□□□□□ -0.64
KLHL3-202ENST00000447439 ZSCAN25Q6NSZ9 544 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 KIF6Q6ZMV9 814 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 CCDC73Q6ZRK6 1079 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 TDRD7Q8NHU6 1098 aaKnown RBP11.04□□□□□ -0.64
KLHL3-202ENST00000447439 AGXT2Q9BYV1 514 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 NBPF3Q9H094 633 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 PIH1D3Q9NQM4 214 aaKnown RBP11.04□□□□□ -0.64
KLHL3-202ENST00000447439 TBC1D2BQ9UPU7 963 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 LAMA4Q16363 1823 aa11.04□□□□□ -0.64
KLHL3-202ENST00000447439 NDUFA8P51970 172 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 HMGN5P82970 282 aaKnown RBP11.03□□□□□ -0.64
KLHL3-202ENST00000447439 IQCB1Q15051 598 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 TBC1D10CQ8IV04 446 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 CNNM1Q9NRU3 951 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 ATG3Q9NT62 314 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 KINO60870 393 aaKnown RBP11.03□□□□□ -0.64
KLHL3-202ENST00000447439 SLC9C2Q5TAH2 1124 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 FILIP1Q7Z7B0 1213 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 AOPEPQ8N6M6 819 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 C8orf76Q96K31 380 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 SLC4A9Q96Q91 983 aa11.03□□□□□ -0.64
KLHL3-202ENST00000447439 ORC3Q9UBD5 711 aaPredicted RBP11.03□□□□□ -0.64
KLHL3-202ENST00000447439 GOLGA6L19H0YKK7 550 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 ZNF213O14771 459 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 CYB5R4Q7L1T6 521 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 MB21D2Q8IYB1 491 aaPredicted RBP11.02□□□□□ -0.64
KLHL3-202ENST00000447439 ENGASEQ8NFI3 743 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 PHKBQ93100 1093 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 ZNF274Q96GC6 653 aaPredicted RBP11.02□□□□□ -0.64
KLHL3-202ENST00000447439 CARD10Q9BWT7 1032 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 SLAIN2Q9P270 581 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 NUP188Q5SRE5 1749 aa11.02□□□□□ -0.64
KLHL3-202ENST00000447439 ZNF335Q9H4Z2 1342 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 USP27XA6NNY8 438 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 MARCKSP29966 332 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 PHKA1P46020 1223 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 NKX1-1Q15270 411 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 SF3A1Q15459 793 aaKnown RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 RALYLQ86SE5 291 aaKnown RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 DHX40Q8IX18 779 aaKnown RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 ZBTB38Q8NAP3 1195 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 TTLL11Q8NHH1 800 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 APPBP2Q92624 585 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 PRDM10Q9NQV6 1147 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 WWC3Q9ULE0 1092 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 ZBTB1Q9Y2K1 713 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 RIC1Q4ADV7 1423 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 CPLX1O14810 134 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 PCCAP05165 728 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 FAM160A1Q05DH4 1040 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 NAA30Q147X3 362 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 STK38Q15208 465 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 GLIPR1L2Q4G1C9 344 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 NLRP10Q86W26 655 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 ZNF592Q92610 1267 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 ZNF396Q96N95 335 aaPredicted RBP11.02□□□□□ -0.65
KLHL3-202ENST00000447439 SDF4Q9BRK5 362 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 BCL2L12Q9HB09 334 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 AKAP2Q9Y2D5 859 aa11.02□□□□□ -0.65
KLHL3-202ENST00000447439 BECN2A8MW95 431 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 B4E1Z4 1266 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 STX1AQ16623 288 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 PTPN21Q16825 1174 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 MICU3Q86XE3 530 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 BTG4Q9NY30 223 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 TRMT112Q9UI30 125 aaKnown RBP11.01□□□□□ -0.65
KLHL3-202ENST00000447439 RIPOR2Q9Y4F9 1068 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 IRS4O14654 1257 aaPredicted RBP11.01□□□□□ -0.65
KLHL3-202ENST00000447439 DPCR1Q3MIW9 517 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 NCOA7Q8NI08 942 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 PRIMPOLQ96LW4 560 aa11.01□□□□□ -0.65
KLHL3-202ENST00000447439 ZNF532Q9HCE3 1301 aa11□□□□□ -0.65
KLHL3-202ENST00000447439 NWD2Q9ULI1 1742 aa11□□□□□ -0.65
KLHL3-202ENST00000447439 CSF1RP07333 972 aa11□□□□□ -0.65
KLHL3-202ENST00000447439 FMR1NBQ8N0W7 255 aaPredicted RBP11□□□□□ -0.65
KLHL3-202ENST00000447439 LINC00301Q8NCQ3 95 aa11□□□□□ -0.65
KLHL3-202ENST00000447439 MRPS27Q92552 414 aaKnown RBP11□□□□□ -0.65
KLHL3-202ENST00000447439 TRMT1Q9NXH9 659 aaKnown RBP11□□□□□ -0.65
KLHL3-202ENST00000447439 CTNNA3Q9UI47 895 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms