RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 CHPF2Q9P2E5 772 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 UBTFL1P0CB47 393 aaPredicted RBP10.06□□□□□ -0.8
HPS4-206ENST00000439453 ZNF165P49910 485 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 RHPN1Q8TCX5 695 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 TM6SF1Q9BZW5 370 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 COL4A1P02462 1669 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 NFIXQ14938 502 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 PRPF40BQ6NWY9 871 aaKnown RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 NECTIN2Q92692 538 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 USP44Q9H0E7 712 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 DNAJC25Q9H1X3 360 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 MMP10P09238 476 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 TAF1P21675 1872 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 IRX5P78411 483 aaPredicted RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 PTH1RQ03431 593 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 DZIP3Q86Y13 1208 aaKnown RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 LRRC8AQ8IWT6 810 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 FHDC1Q9C0D6 1143 aaPredicted RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.05□□□□□ -0.8
HPS4-206ENST00000439453 V9GYY5 206 aaPredicted RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 MYH3P11055 1940 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 USP27XA6NNY8 438 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 PDIA4P13667 645 aaKnown RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 MYL6BP14649 208 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 PTPN14Q15678 1187 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 CCDC30Q5VVM6 783 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 SPATA32Q96LK8 384 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 TIGD1Q96MW7 591 aa10.05□□□□□ -0.8
HPS4-206ENST00000439453 SCAND2PQ9GZW5 306 aaPredicted RBP10.05□□□□□ -0.8
HPS4-206ENST00000439453 DDX21Q9NR30 783 aaKnown RBP eCLIP10.05□□□□□ -0.8
HPS4-206ENST00000439453 EIF2S2P20042 333 aaKnown RBP10.04□□□□□ -0.8
HPS4-206ENST00000439453 FBXO38Q6PIJ6 1188 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 PPP1R42Q7Z4L9 355 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 NLGN2Q8NFZ4 835 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 RGL2O15211 777 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 NEMFO60524 1076 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 NYAP1Q6ZVC0 841 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 RUFY2Q8WXA3 655 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 KCNB2Q92953 911 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 ERO1AQ96HE7 468 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 TFIP11Q9UBB9 837 aaKnown RBP10.04□□□□□ -0.8
HPS4-206ENST00000439453 MAP3K15Q6ZN16 1313 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 UBN2Q6ZU65 1347 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 PDCP20941 246 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 HDGFL1Q5TGJ6 251 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 KIF1BPQ96EK5 621 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 TPCN1Q9ULQ1 816 aa10.04□□□□□ -0.8
HPS4-206ENST00000439453 A0A087WZG4 1122 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 PDE4CQ08493 712 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 POLA2Q14181 598 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 ARID5BQ14865 1188 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 ELF2Q15723 593 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 SLFNL1Q499Z3 407 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 NLGN1Q8N2Q7 840 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 LEO1Q8WVC0 666 aaPredicted RBP10.03□□□□□ -0.8
HPS4-206ENST00000439453 NR1I2O75469 434 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 SYT17Q9BSW7 474 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 ERICH4A6NGS2 130 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 FAM193AP78312 1265 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 PHAXQ9H814 394 aaKnown RBP10.03□□□□□ -0.8
HPS4-206ENST00000439453 CALCOCO1Q9P1Z2 691 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 SBF1O95248 1867 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 CHD4Q14839 1912 aa10.03□□□□□ -0.8
HPS4-206ENST00000439453 CAVIN2O95810 425 aa10.02□□□□□ -0.8
HPS4-206ENST00000439453 SKILP12757 684 aa10.02□□□□□ -0.8
HPS4-206ENST00000439453 SARM1Q6SZW1 724 aa10.02□□□□□ -0.8
HPS4-206ENST00000439453 ADCY9O60503 1353 aa10.02□□□□□ -0.8
HPS4-206ENST00000439453 SLX4Q8IY92 1834 aa10.02□□□□□ -0.8
HPS4-206ENST00000439453 VGLL3A8MV65 326 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 ERVV-1B6SEH8 477 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 GOLGA6L19H0YKK7 550 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 ZPR1O75312 459 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 BICD2Q8TD16 824 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 XAGE3Q8WTP9 111 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 MRFAP1L1Q96HT8 127 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 ST7Q9NRC1 585 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 NAP1L2Q9ULW6 460 aaPredicted RBP10.02□□□□□ -0.81
HPS4-206ENST00000439453 SLU7O95391 586 aaKnown RBP10.02□□□□□ -0.81
HPS4-206ENST00000439453 ZKSCAN1P17029 563 aaPredicted RBP10.02□□□□□ -0.81
HPS4-206ENST00000439453 NECTIN1Q15223 517 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 CLEC4GQ6UXB4 293 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 PGBD1Q96JS3 809 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 FER1L6Q2WGJ9 1857 aa10.02□□□□□ -0.81
HPS4-206ENST00000439453 SRGAP3O43295 1099 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 GLRX3O76003 335 aaKnown RBP10.01□□□□□ -0.81
HPS4-206ENST00000439453 KCNA3P22001 575 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 IQCB1Q15051 598 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CREBRFQ8IUR6 639 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 TRMT1Q9NXH9 659 aaKnown RBP10.01□□□□□ -0.81
HPS4-206ENST00000439453 ZNF330Q9Y3S2 320 aaPredicted RBP10.01□□□□□ -0.81
HPS4-206ENST00000439453 A0A1B0GUL6 1792 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 LRRC37AA6NMS7 1700 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 COPS6Q7L5N1 327 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 ZNF34Q8IZ26 560 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 ZNF446Q9NWS9 450 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 DBF4Q9UBU7 674 aaPredicted RBP10.01□□□□□ -0.81
HPS4-206ENST00000439453 ABCC12Q96J65 1359 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 TTC41PQ6P2S7 1318 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CCDC88AQ3V6T2 1871 aa10.01□□□□□ -0.81
HPS4-206ENST00000439453 CCDC69A6NI79 296 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms