RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 SCRN1Q12765 414 aa9.4□□□□□ -0.91
HPS4-205ENST00000429411 PTPN21Q16825 1174 aa9.4□□□□□ -0.91
HPS4-205ENST00000429411 BCL2L12Q9HB09 334 aa9.4□□□□□ -0.91
HPS4-205ENST00000429411 ORC3Q9UBD5 711 aaPredicted RBP9.4□□□□□ -0.91
HPS4-205ENST00000429411 ST3GAL1Q11201 340 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 MAPK8IP2Q13387 824 aaPredicted RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 MICU3Q86XE3 530 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 FAM89AQ96GI7 184 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 KAZALD1Q96I82 304 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 USP28Q96RU2 1077 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 CWC25Q9NXE8 425 aaPredicted RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 WDR17Q8IZU2 1322 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 SKILP12757 684 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 NAA30Q147X3 362 aaPredicted RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 EZH2Q15910 746 aaKnown RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 METTL24Q5JXM2 366 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 DHX32Q7L7V1 743 aaKnown RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 HELBQ8NG08 1087 aaPredicted RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 GTF3C6Q969F1 213 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 PUS3Q9BZE2 481 aaKnown RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 SPATA31A1Q5TZJ5 1347 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 A0A1B0GUL7 405 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 PTPN14Q15678 1187 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 IMMTQ16891 758 aaKnown RBP9.39□□□□□ -0.91
HPS4-205ENST00000429411 PI16Q6UXB8 463 aa9.39□□□□□ -0.91
HPS4-205ENST00000429411 UPF1Q92900 1129 aaKnown RBP eCLIP9.39□□□□□ -0.91
HPS4-205ENST00000429411 SERPINC1P01008 464 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 LMOD1P29536 600 aaPredicted RBP9.38□□□□□ -0.91
HPS4-205ENST00000429411 PTPN12Q05209 780 aaKnown RBP9.38□□□□□ -0.91
HPS4-205ENST00000429411 TRIM29Q14134 588 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 TMC6Q7Z403 805 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 PGBD1Q96JS3 809 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 NAT10Q9H0A0 1025 aaKnown RBP9.38□□□□□ -0.91
HPS4-205ENST00000429411 CLSTN2Q9H4D0 955 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 SPATA31A5Q5VU36 1347 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 SPATA31A7Q8IWB4 1347 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 CHRM1P11229 460 aaPredicted RBP9.38□□□□□ -0.91
HPS4-205ENST00000429411 ZNF75DP51815 510 aa9.38□□□□□ -0.91
HPS4-205ENST00000429411 CPLX2Q6PUV4 134 aaKnown RBP9.38□□□□□ -0.91
HPS4-205ENST00000429411 STX1AQ16623 288 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 C11orf57Q6ZUT1 292 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 MARCH10Q8NA82 808 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 KCNF1Q9H3M0 494 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 ZNF213O14771 459 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 ATP5JP18859 108 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 KBTBD3Q8NAB2 608 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 TMEM87AQ8NBN3 555 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 KIAA1524Q8TCG1 905 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 NUP133Q8WUM0 1156 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 ZSCAN16Q9H4T2 348 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 ANO10Q9NW15 660 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 XRN1Q8IZH2 1706 aaKnown RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 MED1Q15648 1581 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 PHKG2P15735 406 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 FAM196AQ6ZSG2 479 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 MYL10Q9BUA6 226 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 IQSEC3Q9UPP2 1182 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 ATF5Q9Y2D1 282 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 RGPD8O14715 1765 aaPredicted RBP9.37□□□□□ -0.91
HPS4-205ENST00000429411 PXDNQ92626 1479 aa9.37□□□□□ -0.91
HPS4-205ENST00000429411 CCDC69A6NI79 296 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 E7EWF7 191 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 PRC1O43663 620 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 MTX1Q13505 466 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 CFAP100Q494V2 611 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 CEP135Q66GS9 1140 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 ZSCAN25Q6NSZ9 544 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 LDHAL6AQ6ZMR3 332 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 CACTINQ8WUQ7 758 aaKnown RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 EPB41L2O43491 1005 aaKnown RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 ZBTB7AO95365 584 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 LRRFIP1Q32MZ4 808 aaKnown RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 SPECC1Q5M775 1068 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 MSL1Q68DK7 614 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 CARD10Q9BWT7 1032 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 NWD1Q149M9 1564 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 PES1O00541 588 aaKnown RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 SLC3A2P08195 630 aaKnown RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 ADORA1P30542 326 aa9.36□□□□□ -0.91
HPS4-205ENST00000429411 IFIT5Q13325 482 aaKnown RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 CCDC94Q9BW85 323 aaPredicted RBP9.36□□□□□ -0.91
HPS4-205ENST00000429411 PEAK1Q9H792 1746 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 DHX16O60231 1041 aaKnown RBP9.35□□□□□ -0.91
HPS4-205ENST00000429411 HSPD1P10809 573 aaKnown RBP9.35□□□□□ -0.91
HPS4-205ENST00000429411 TERF1P54274 439 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 KIF6Q6ZMV9 814 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 STOX1Q6ZVD7 989 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 MRPS27Q92552 414 aaKnown RBP9.35□□□□□ -0.91
HPS4-205ENST00000429411 TFCP2L1Q9NZI6 479 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 IFNKQ9P0W0 207 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 BCL9LQ86UU0 1499 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 RNF113AO15541 343 aaKnown RBP9.35□□□□□ -0.91
HPS4-205ENST00000429411 PHKBQ93100 1093 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 SFPQP23246 707 aaKnown RBP eCLIP9.35□□□□□ -0.91
HPS4-205ENST00000429411 CCDC144BQ3MJ40 725 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 SLC9C2Q5TAH2 1124 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 DCAF5Q96JK2 942 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 ZKSCAN3Q9BRR0 538 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 COPRSQ9NQ92 184 aa9.35□□□□□ -0.91
HPS4-205ENST00000429411 TMOD3Q9NYL9 352 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms