RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 GPATCH8Q9UKJ3 1502 aaKnown RBP14.46□□□□□ -0.09
LDB3-205ENST00000429277 ITSN2Q9NZM3 1697 aa14.46□□□□□ -0.1
LDB3-205ENST00000429277 ZNF518AQ6AHZ1 1483 aa14.46□□□□□ -0.1
LDB3-205ENST00000429277 TRMT1LQ7Z2T5 733 aaKnown RBP14.46□□□□□ -0.1
LDB3-205ENST00000429277 DHX58Q96C10 678 aa14.46□□□□□ -0.1
LDB3-205ENST00000429277 LDHBP07195 334 aaKnown RBP14.45□□□□□ -0.1
LDB3-205ENST00000429277 CCDC129Q6ZRS4 1044 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 JDP2Q8WYK2 163 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 DNAI1Q9UI46 699 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 PCDH11XQ9BZA7 1347 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 PCDH11YQ9BZA8 1340 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 IRS4O14654 1257 aaPredicted RBP14.45□□□□□ -0.1
LDB3-205ENST00000429277 MCM9Q9NXL9 1143 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 MTRF1LQ9UGC7 380 aaKnown RBP14.45□□□□□ -0.1
LDB3-205ENST00000429277 PARP3Q9Y6F1 533 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 NPATQ14207 1427 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 NOLC1Q14978 699 aaKnown RBP eCLIP14.45□□□□□ -0.1
LDB3-205ENST00000429277 CNGA4Q8IV77 575 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 SIRT1Q96EB6 747 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 SLU7O95391 586 aaKnown RBP14.45□□□□□ -0.1
LDB3-205ENST00000429277 CCDC186Q7Z3E2 898 aa14.45□□□□□ -0.1
LDB3-205ENST00000429277 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.45□□□□□ -0.1
LDB3-205ENST00000429277 V9GYY5 206 aaPredicted RBP14.45□□□□□ -0.1
LDB3-205ENST00000429277 POLD1P28340 1107 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 PLCD1P51178 756 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 PICALMQ13492 652 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 VWA3BQ502W6 1294 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 PARP10Q53GL7 1025 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 DHX37Q8IY37 1157 aaKnown RBP14.44□□□□□ -0.1
LDB3-205ENST00000429277 MTUS1Q9ULD2 1270 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 CCDC65Q8IXS2 484 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 SMC6Q96SB8 1091 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 PIK3C2GO75747 1445 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 HOXB7P09629 217 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 TNNC1P63316 161 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 CREB3L3Q68CJ9 461 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 DKC1O60832 514 aaKnown RBP eCLIP14.44□□□□□ -0.1
LDB3-205ENST00000429277 TRIM14Q14142 442 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 MARCKSP29966 332 aaPredicted RBP14.44□□□□□ -0.1
LDB3-205ENST00000429277 MAP3K9P80192 1104 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 C8orf58Q8NAV2 365 aa14.44□□□□□ -0.1
LDB3-205ENST00000429277 PARD3Q8TEW0 1356 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 MAST3O60307 1309 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 TYRO3Q06418 890 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 CEP85Q6P2H3 762 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 GSTA5Q7RTV2 222 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 TMEM87BQ96K49 555 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 LRRC2Q9BYS8 371 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 C19orf44Q9H6X5 657 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 RILPL1Q5EBL4 403 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 RUFY3Q7L099 469 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 CSRNP2Q9H175 543 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 LUC7L2Q9Y383 392 aaKnown RBP14.43□□□□□ -0.1
LDB3-205ENST00000429277 ALDH3A1P30838 453 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 SMC5Q8IY18 1101 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 DNAJC25Q9H1X3 360 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 PCDHB15Q9Y5E8 787 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 DNM1Q05193 864 aaKnown RBP14.43□□□□□ -0.1
LDB3-205ENST00000429277 TUBB2AQ13885 445 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 NAP1L3Q99457 506 aaPredicted RBP14.43□□□□□ -0.1
LDB3-205ENST00000429277 TUBB2BQ9BVA1 445 aa14.43□□□□□ -0.1
LDB3-205ENST00000429277 PTPDC1A2A3K4 754 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 VAV2P52735 878 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 ZSWIM4Q9H7M6 989 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 ATP6V0A2Q9Y487 856 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 ELP1O95163 1332 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 NDC80O14777 642 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 PARP1P09874 1014 aaKnown RBP14.42□□□□□ -0.1
LDB3-205ENST00000429277 EEF2P13639 858 aaKnown RBP14.42□□□□□ -0.1
LDB3-205ENST00000429277 SLC39A6Q13433 755 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 PPP2R5BQ15173 497 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 ZNF354CQ86Y25 554 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 JARID2Q92833 1246 aaPredicted RBP14.42□□□□□ -0.1
LDB3-205ENST00000429277 POLKQ9UBT6 870 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 AOX1Q06278 1338 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 MRPS9P82933 396 aaKnown RBP14.42□□□□□ -0.1
LDB3-205ENST00000429277 MTHFSDQ2M296 383 aaKnown RBP14.42□□□□□ -0.1
LDB3-205ENST00000429277 SLC4A8Q2Y0W8 1093 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 NBPF14Q5TI25 921 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 MAGEB6Q8N7X4 407 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 RBM17Q96I25 401 aaKnown RBP14.42□□□□□ -0.1
LDB3-205ENST00000429277 TXNDC16Q9P2K2 825 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 PRAG1Q86YV5 1406 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 UBXN1Q04323 297 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 DDX21Q9NR30 783 aaKnown RBP eCLIP14.42□□□□□ -0.1
LDB3-205ENST00000429277 ZKSCAN5Q9Y2L8 839 aa14.42□□□□□ -0.1
LDB3-205ENST00000429277 CCDC6Q16204 474 aa14.41□□□□□ -0.1
LDB3-205ENST00000429277 SV2BQ7L1I2 683 aa14.41□□□□□ -0.1
LDB3-205ENST00000429277 F8W031 263 aaPredicted RBP14.41□□□□□ -0.1
LDB3-205ENST00000429277 MXRA7P84157 204 aa14.41□□□□□ -0.1
LDB3-205ENST00000429277 HOOK2Q96ED9 719 aa14.41□□□□□ -0.1
LDB3-205ENST00000429277 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.41□□□□□ -0.1
LDB3-205ENST00000429277 VAMP4O75379 141 aa14.41□□□□□ -0.1
LDB3-205ENST00000429277 KIFAP3Q92845 792 aa14.41□□□□□ -0.1
LDB3-205ENST00000429277 LLPHQ9BRT6 129 aaKnown RBP14.41□□□□□ -0.1
LDB3-205ENST00000429277 AK2P54819 239 aa14.4□□□□□ -0.1
LDB3-205ENST00000429277 CALCOCO2Q13137 446 aa14.4□□□□□ -0.1
LDB3-205ENST00000429277 HAUS3Q68CZ6 603 aa14.4□□□□□ -0.1
LDB3-205ENST00000429277 IQSEC3Q9UPP2 1182 aaPredicted RBP14.4□□□□□ -0.1
LDB3-205ENST00000429277 FRMD4BQ9Y2L6 1034 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms