RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TRPC3Q13507 836 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 DDB1Q16531 1140 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 RBM26Q5T8P6 1007 aaKnown RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 KCNG1Q9UIX4 513 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 MAST3O60307 1309 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 DNM2P50570 870 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 UBE2HP62256 183 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 RASA3Q14644 834 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 ZNF830Q96NB3 372 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 RIOK1Q9BRS2 568 aaKnown RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 DNMBPQ6XZF7 1577 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 KRT86O43790 486 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 LDHBP07195 334 aaKnown RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 SARNPP82979 210 aaKnown RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 PROCA1Q8NCQ7 364 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 FAM204AQ9H8W3 233 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 TEX14Q8IWB6 1497 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 ANKRD13DQ6ZTN6 518 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 PDE6BP35913 854 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 SEL1L2Q5TEA6 688 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 NIP7Q9Y221 180 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 KRT5P13647 590 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 GJB2P29033 226 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 UTP14CQ5TAP6 766 aaKnown RBP7.72□□□□□ -1.17
SCN1A-204ENST00000423058 PPFIBP2Q8ND30 876 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 CDCA7LQ96GN5 454 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 IGF1RP08069 1367 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 TTC36A6NLP5 189 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 ATP5J2-PTCD1G3V325 749 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 TUBB4AP04350 444 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 P4HA1P13674 534 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 CLUL1Q15846 466 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 USHBP1Q8N6Y0 703 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 CARD10Q9BWT7 1032 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 GJA3Q9Y6H8 435 aa7.72□□□□□ -1.17
SCN1A-204ENST00000423058 GJC1P36383 396 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 ZNF569Q5MCW4 686 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 LIN9Q5TKA1 542 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 DTHD1Q6ZMT9 781 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 WASLO00401 505 aaPredicted RBP7.71□□□□□ -1.17
SCN1A-204ENST00000423058 SUPT20HQ8NEM7 779 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 ALG1Q9BT22 464 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 STK32BQ9NY57 414 aa7.71□□□□□ -1.17
SCN1A-204ENST00000423058 FLIIQ13045 1269 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 ZSCAN30Q86W11 494 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 ANKRD24Q8TF21 1146 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 KIF3CO14782 793 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 CIB2O75838 187 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 MCM4P33991 863 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 RILPL1Q5EBL4 403 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 TAOK1Q7L7X3 1001 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 USH1CQ9Y6N9 552 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 SETDB1Q15047 1291 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 IVLP07476 585 aa7.71□□□□□ -1.18
SCN1A-204ENST00000423058 ERCC5P28715 1186 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 SH2D4BQ5SQS7 431 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 ZBTB21Q9ULJ3 1066 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 MAP3K1Q13233 1512 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 SSFA2P28290 1259 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 VWA3BQ502W6 1294 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 TIAM1Q13009 1591 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 PFDN6O15212 129 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 CALUO43852 315 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 PARP1P09874 1014 aaKnown RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 MCMDC2Q4G0Z9 681 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 CCDC26Q8TAB7 109 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 PPANQ9NQ55 473 aaKnown RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 ZNF277Q9NRM2 450 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 BIN1O00499 593 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 XRCC6P12956 609 aaKnown RBP eCLIP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 TTC6Q86TZ1 520 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 MPNDQ8N594 471 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 EIF2AK4Q9P2K8 1649 aaKnown RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 C11orf95C9JLR9 678 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 AFMP43652 599 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 HAND2P61296 217 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 ATP6V1E1P36543 226 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 CALCOCO2Q13137 446 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 WAPLQ7Z5K2 1190 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 AZI2Q9H6S1 392 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 TRAPPC3LQ5T215 181 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 ARFGAP3Q9NP61 516 aa7.7□□□□□ -1.18
SCN1A-204ENST00000423058 TRMT1Q9NXH9 659 aaKnown RBP7.7□□□□□ -1.18
SCN1A-204ENST00000423058 GNG11P61952 73 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 RAB3GAP1Q15042 981 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 HAUS3Q68CZ6 603 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 NUF2Q9BZD4 464 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 AFG3L2Q9Y4W6 797 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 SMARCA5O60264 1052 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-204ENST00000423058 MCM9Q9NXL9 1143 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 IL15P40933 162 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-204ENST00000423058 BIRC3Q13489 604 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 UBL4BQ8N7F7 174 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 STMN2Q93045 179 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 TOP2BQ02880 1626 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 KLF18A0A0U1RQI7 1052 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 TRIM75PA6NK02 468 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 YWHAEP62258 255 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms