RNA–Protein interactions for RNA: ENST00000398587.6

PCDHGA11-201, Transcript of protocadherin gamma subfamily A, 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA11, Length 4,647 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11-201ENST00000398587 VPS36Q86VN1 386 aa16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 FAM114A1Q8IWE2 563 aa16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 TMEM87BQ96K49 555 aa16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 GNPATO15228 680 aa16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 RRP9O43818 475 aaKnown RBP16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 GBP3Q9H0R5 595 aa16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 CCDC87Q9NVE4 849 aa16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 LDHBP07195 334 aaKnown RBP16.3■□□□□ 0.2
PCDHGA11-201ENST00000398587 MAP3K4Q9Y6R4 1608 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 UBASH3AP57075 661 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 LPIN2Q92539 896 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 UNC13BO14795 1591 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 CCDC66A2RUB6 948 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 GOLGA6L10A6NI86 522 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 GPAA1O43292 621 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 SPAG1Q07617 926 aa16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 CDK12Q9NYV4 1490 aaPredicted RBP16.29■□□□□ 0.2
PCDHGA11-201ENST00000398587 N4BP3O15049 544 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 USO1O60763 962 aaKnown RBP16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 CASQ1P31415 396 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 TMCO3Q6UWJ1 677 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 HEATR3Q7Z4Q2 680 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 IBTKQ9P2D0 1353 aaPredicted RBP16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 SSH2Q76I76 1423 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 AFMP43652 599 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 TRAPPC3LQ5T215 181 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 CCDC186Q7Z3E2 898 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 TRPM1Q7Z4N2 1603 aa16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 F8W031 263 aaPredicted RBP16.28■□□□□ 0.2
PCDHGA11-201ENST00000398587 TMEM94Q12767 1356 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 CLCN1P35523 988 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 STAT6P42226 847 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 LEKR1Q6ZMV7 388 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 AOPEPQ8N6M6 819 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 ANGEL1Q9UNK9 670 aaKnown RBP16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 NAPAP54920 295 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 CCDC40Q4G0X9 1142 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 EAF2Q96CJ1 260 aaPredicted RBP16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 TRIM47Q96LD4 638 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 CLTCL1P53675 1640 aa16.27■□□□□ 0.2
PCDHGA11-201ENST00000398587 HS1BP3Q53T59 392 aa16.27■□□□□ 0.19
PCDHGA11-201ENST00000398587 ZKSCAN5Q9Y2L8 839 aa16.27■□□□□ 0.19
PCDHGA11-201ENST00000398587 B4E1Z4 1266 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 SNW1Q13573 536 aaKnown RBP16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 TDRD12Q587J7 1177 aaKnown RBP16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 C6orf50Q9HD87 102 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 RXRAP19793 462 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 RRAGBQ5VZM2 374 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 EXOC1Q9NV70 894 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 CTAGE1Q96RT6 745 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 CCNL1Q9UK58 526 aaPredicted RBP16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 NPHP4O75161 1426 aaPredicted RBP16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 MYO1BO43795 1136 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 KRT2P35908 639 aa16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 MATR3P43243 847 aaKnown RBP eCLIP16.26■□□□□ 0.19
PCDHGA11-201ENST00000398587 DCAF8L1A6NGE4 600 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 HIBADHP31937 336 aaKnown RBP16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 PICALMQ13492 652 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 CNBD1Q8NA66 436 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 CNKSR2Q8WXI2 1034 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 PRIMPOLQ96LW4 560 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 ERMNQ8TAM6 284 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 RBM28Q9NW13 759 aaKnown RBP16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 MROH5Q6ZUA9 1318 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 SKIDA1Q1XH10 827 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 STXBP4Q6ZWJ1 553 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 TFCP2L1Q9NZI6 479 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 STAP2Q9UGK3 403 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 SKILP12757 684 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 JAKMIP3Q5VZ66 844 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 OGFOD1Q8N543 542 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 DSCC1Q9BVC3 393 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 NDUFB9Q9Y6M9 179 aa16.25■□□□□ 0.19
PCDHGA11-201ENST00000398587 HDAC9Q9UKV0 1011 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 DHX58Q96C10 678 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 OSBPL3Q9H4L5 887 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 PSMA7O14818 248 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 POTEJP0CG39 1038 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 ZAP70P43403 619 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 FAM160A1Q05DH4 1040 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 NOLC1Q14978 699 aaKnown RBP eCLIP16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 EYA3Q99504 573 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 ARMT1Q9H993 441 aa16.24■□□□□ 0.19
PCDHGA11-201ENST00000398587 CETN1Q12798 172 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 TTLL7Q6ZT98 887 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 KRI1Q8N9T8 703 aaKnown RBP16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 GNA11P29992 359 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 PAFAH1B1P43034 410 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 RILPL1Q5EBL4 403 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 ZKSCAN3Q9BRR0 538 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 COPRSQ9NQ92 184 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 PAXBP1Q9Y5B6 917 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 RNF17Q9BXT8 1623 aaKnown RBP16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 LMOD1P29536 600 aaPredicted RBP16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 TCERG1LQ5VWI1 586 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 RRP36Q96EU6 259 aaKnown RBP16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 ZNF830Q96NB3 372 aaPredicted RBP16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 PPP4R3AQ6IN85 833 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 TTC6Q86TZ1 520 aa16.23■□□□□ 0.19
PCDHGA11-201ENST00000398587 TSPOAP1O95153 1857 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms