RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PDE6AP16499 860 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 PDCP20941 246 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 TSGA10IPQ3SY00 556 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 MPNDQ8N594 471 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 VGLL2Q8N8G2 317 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 GTF3C6Q969F1 213 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 ARMT1Q9H993 441 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 COL14A1Q05707 1796 aaKnown RBP13.14□□□□□ -0.31
TCOF1-203ENST00000394269 TUBGCP6Q96RT7 1819 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 ANKRD18AQ8IVF6 992 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 PPP1R1BQ9UD71 204 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-203ENST00000394269 MROH5Q6ZUA9 1318 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 HMGB1P09429 215 aaKnown RBP13.14□□□□□ -0.31
TCOF1-203ENST00000394269 OTUD7BQ6GQQ9 843 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 ZSCAN25Q6NSZ9 544 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 RAI14Q9P0K7 980 aa13.14□□□□□ -0.31
TCOF1-203ENST00000394269 PRC1O43663 620 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 MAP3K12Q12852 859 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 VPS72Q15906 364 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 CAMK4Q16566 473 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 SHANK3Q9BYB0 1731 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 PRKAB2O43741 272 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 MBD4O95243 580 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 ADD2P35612 726 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 TTF1Q15361 905 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-203ENST00000394269 SYAP1Q96A49 352 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-203ENST00000394269 CDC5LQ99459 802 aaKnown RBP13.13□□□□□ -0.31
TCOF1-203ENST00000394269 CPLX1O14810 134 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 UQCRFS1P1P0C7P4 283 aa13.13□□□□□ -0.31
TCOF1-203ENST00000394269 CELF1Q92879 486 aaKnown RBP13.13□□□□□ -0.31
TCOF1-203ENST00000394269 LAMB4A4D0S4 1761 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 RIC1Q4ADV7 1423 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 KLF18A0A0U1RQI7 1052 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 KRT85P78386 507 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 AMIGO3Q86WK7 504 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 TFCP2L1Q9NZI6 479 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 RTCBQ9Y3I0 505 aaKnown RBP13.12□□□□□ -0.31
TCOF1-203ENST00000394269 PTPDC1A2A3K4 754 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 CHAF1AQ13111 956 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-203ENST00000394269 GIMAP6Q6P9H5 292 aa13.12□□□□□ -0.31
TCOF1-203ENST00000394269 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.12□□□□□ -0.31
TCOF1-203ENST00000394269 QTRT2Q9H974 415 aaKnown RBP13.12□□□□□ -0.31
TCOF1-203ENST00000394269 GOLGA8BA8MQT2 603 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 B4E1Z4 1266 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 FOXP2O15409 715 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 RFC4P35249 363 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 CTDSPL2Q05D32 466 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 SLC4A8Q2Y0W8 1093 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 NFXL1Q6ZNB6 911 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 CCDC82Q8N4S0 544 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 NCOA7Q8NI08 942 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 NAPBQ9H115 298 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 UBR2Q8IWV8 1755 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 MCM5P33992 734 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 TDO2P48775 406 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 SPATA32Q96LK8 384 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 ITGB4P16144 1822 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 MINDY4BA8MYZ0 360 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 PDIA3P30101 505 aaKnown RBP13.11□□□□□ -0.31
TCOF1-203ENST00000394269 NLRP3Q96P20 1036 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 ZKSCAN3Q9BRR0 538 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 GJB4Q9NTQ9 266 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 COL16A1Q07092 1604 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-203ENST00000394269 PHLPP1O60346 1717 aa13.11□□□□□ -0.31
TCOF1-203ENST00000394269 ZNF445P59923 1031 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 UBE2HP62256 183 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 LRSAM1Q6UWE0 723 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 MYL10Q9BUA6 226 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 FTOQ9C0B1 505 aaKnown RBP eCLIP13.1□□□□□ -0.31
TCOF1-203ENST00000394269 EXOSC10Q01780 885 aaKnown RBP13.1□□□□□ -0.31
TCOF1-203ENST00000394269 TTC6Q86TZ1 520 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 ARHGEF1Q92888 912 aaKnown RBP13.1□□□□□ -0.31
TCOF1-203ENST00000394269 CHMP4CQ96CF2 233 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 SLC4A4Q9Y6R1 1079 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 CYP7A1P22680 504 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 SLC51AQ86UW1 340 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 MICU3Q86XE3 530 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 NKX2-3Q8TAU0 364 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 BICD2Q8TD16 824 aa13.1□□□□□ -0.31
TCOF1-203ENST00000394269 FGFR2P21802 821 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 FAM196AQ6ZSG2 479 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 RFX7Q2KHR2 1363 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 POLR3DP05423 398 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-203ENST00000394269 TBC1D10CQ8IV04 446 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 NSUN7Q8NE18 718 aaKnown RBP13.09□□□□□ -0.31
TCOF1-203ENST00000394269 SDR42E1Q8WUS8 393 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 AK7Q96M32 723 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 TSPY26PQ9H489 355 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 ISY1Q9ULR0 285 aaKnown RBP13.09□□□□□ -0.31
TCOF1-203ENST00000394269 AHDC1Q5TGY3 1603 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-203ENST00000394269 LTBP4Q8N2S1 1624 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 JCADQ9P266 1359 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 PFKFB2O60825 505 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 KLRK1P26718 216 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 CSPP1Q1MSJ5 1256 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 CAVIN4Q5BKX8 364 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 TPTE2Q6XPS3 522 aa13.09□□□□□ -0.31
TCOF1-203ENST00000394269 CTDNEP1O95476 244 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 CLEC4GQ6UXB4 293 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 CKAP2LQ8IYA6 745 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms