RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SDR42E1Q8WUS8 393 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 TAOK3Q9H2K8 898 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 ITSN1Q15811 1721 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 H7C1D1 291 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 BBOX1O75936 387 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 MXD3Q9BW11 206 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 U3KPZ7 1027 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-205ENST00000392004 UBN2Q6ZU65 1347 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 HLA-DOAP06340 250 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 SMC5Q8IY18 1101 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 TCEAL9Q9UHQ7 104 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 DENND2AQ9ULE3 1009 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 MINPP1Q9UNW1 487 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 ROBO1Q9Y6N7 1651 aa12.15□□□□□ -0.46
COL6A3-205ENST00000392004 TBC1D10BQ4KMP7 808 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-205ENST00000392004 CCDC93Q567U6 631 aa12.15□□□□□ -0.47
COL6A3-205ENST00000392004 ISCA1Q9BUE6 129 aa12.15□□□□□ -0.47
COL6A3-205ENST00000392004 NRKQ7Z2Y5 1582 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 MROH5Q6ZUA9 1318 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 CARMIL3Q8ND23 1372 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 CEMIPQ8WUJ3 1361 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 IBSPP21815 317 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-205ENST00000392004 XDHP47989 1333 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 SASH1O94885 1247 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 C3orf67Q6ZVT6 689 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 BRIP1Q9BX63 1249 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 PDRG1Q9NUG6 133 aa12.14□□□□□ -0.47
COL6A3-205ENST00000392004 ZNF532Q9HCE3 1301 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 NCAPD2Q15021 1401 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 MSNP26038 577 aaKnown RBP12.13□□□□□ -0.47
COL6A3-205ENST00000392004 FERMT3Q86UX7 667 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 SRCAPQ6ZRS2 3230 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 WTIPA6NIX2 430 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-205ENST00000392004 RC3H1Q5TC82 1133 aaKnown RBP12.13□□□□□ -0.47
COL6A3-205ENST00000392004 USP40Q9NVE5 1235 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 ATP2B4P23634 1241 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 MFSD6Q6ZSS7 791 aa12.13□□□□□ -0.47
COL6A3-205ENST00000392004 ZGPATQ8N5A5 531 aaKnown RBP12.13□□□□□ -0.47
COL6A3-205ENST00000392004 RNF113AO15541 343 aaKnown RBP12.12□□□□□ -0.47
COL6A3-205ENST00000392004 MCMDC2Q4G0Z9 681 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 CABP5Q9NP86 173 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 IQCA1Q86XH1 822 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 FHDC1Q9C0D6 1143 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-205ENST00000392004 RBM8AQ9Y5S9 174 aaKnown RBP12.12□□□□□ -0.47
COL6A3-205ENST00000392004 BCL9O00512 1426 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 PRAMEF18Q5VWM3 479 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 CCDC83Q8IWF9 413 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 COPRSQ9NQ92 184 aa12.12□□□□□ -0.47
COL6A3-205ENST00000392004 CIZ1Q9ULV3 898 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-205ENST00000392004 GPAA1O43292 621 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 TSPY3P0CV98 308 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 TSPY8P0CW00 308 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 GSTO1P78417 241 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 GPSM2P81274 684 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 WDR66Q8TBY9 1149 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 PRDX5P30044 214 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 ZNF34Q8IZ26 560 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 MTFR1LQ9H019 292 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 TNS2Q63HR2 1409 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 NALCNQ8IZF0 1738 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 CHGBP05060 677 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 DDR1Q08345 913 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 BMP2KLQ5H9B9 411 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 MIGA2Q7L4E1 593 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 SUPT20HQ8NEM7 779 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 KIF3AQ9Y496 699 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 BCL9LQ86UU0 1499 aa12.11□□□□□ -0.47
COL6A3-205ENST00000392004 PLSCR1O15162 318 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 DYNLL1P63167 89 aaKnown RBP12.1□□□□□ -0.47
COL6A3-205ENST00000392004 PLS1Q14651 629 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 TMEM67Q5HYA8 995 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 PDIA4P13667 645 aaKnown RBP12.1□□□□□ -0.47
COL6A3-205ENST00000392004 AMIGO3Q86WK7 504 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 NECAB1Q8N987 351 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 PHLPP1O60346 1717 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 NTSR2O95665 410 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 BRF1Q92994 677 aa12.1□□□□□ -0.47
COL6A3-205ENST00000392004 VIRMAQ69YN4 1812 aaKnown RBP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 FAM196BA6NMK8 535 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 NF2P35240 595 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 CTDSPL2Q05D32 466 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 PDE4BQ07343 736 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 PDE4CQ08493 712 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 RASGRF1Q13972 1273 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 TNPO1Q92973 898 aaKnown RBP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 TEKT1Q969V4 418 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 KLRK1P26718 216 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 CCDC173Q0VFZ6 552 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 PROM2Q8N271 834 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 RGS17Q9UGC6 210 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 USP17L12C9JPN9 530 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 USP17L21D6R901 530 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 UPF1Q92900 1129 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 BSDC1Q9NW68 430 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 CNTNAP4Q9C0A0 1308 aa12.09□□□□□ -0.47
COL6A3-205ENST00000392004 MED1Q15648 1581 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 CHD2O14647 1828 aaKnown RBP12.09□□□□□ -0.47
COL6A3-205ENST00000392004 FOXO4P98177 505 aa12.08□□□□□ -0.47
COL6A3-205ENST00000392004 SAFBQ15424 915 aaKnown RBP eCLIP12.08□□□□□ -0.47
COL6A3-205ENST00000392004 GOLGA8BA8MQT2 603 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms