RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TRIM7Q9C029 511 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 FRMD4BQ9Y2L6 1034 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 PLCB3Q01970 1234 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 TUBB2AQ13885 445 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 PPP1R7Q15435 360 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 WDR44Q5JSH3 913 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 ISM2Q6H9L7 571 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 RBM17Q96I25 401 aaKnown RBP7.29□□□□□ -1.24
UPF2-201ENST00000356352 TUBB2BQ9BVA1 445 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 GDPD2Q9HCC8 539 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 CHPF2Q9P2E5 772 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 ADGRF5Q8IZF2 1346 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 TOM1O60784 492 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 LMOD1P29536 600 aaPredicted RBP7.29□□□□□ -1.24
UPF2-201ENST00000356352 DTHD1Q6ZMT9 781 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 TTC6Q86TZ1 520 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 CNGA4Q8IV77 575 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 ANKRD44Q8N8A2 993 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 SMC1BQ8NDV3 1235 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 XAGE3Q8WTP9 111 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 SNX21Q969T3 373 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 DHX58Q96C10 678 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 SELENOSQ9BQE4 189 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 EXOC7Q9UPT5 735 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 NIP7Q9Y221 180 aaKnown RBP eCLIP7.29□□□□□ -1.24
UPF2-201ENST00000356352 CLEC11AQ9Y240 323 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 UNC13AQ9UPW8 1703 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 NESP48681 1621 aa7.29□□□□□ -1.24
UPF2-201ENST00000356352 EPB41P11171 864 aaKnown RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 PLCD1P51178 756 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 MNAT1P51948 309 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 VAV2P52735 878 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 PDE1AP54750 535 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 UBXN1Q04323 297 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 AFAP1L2Q8N4X5 818 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 AOPEPQ8N6M6 819 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 CCDC26Q8TAB7 109 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 CCT6BQ92526 530 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 HOOK2Q96ED9 719 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 SAMD15Q9P1V8 674 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 STIM2Q9P246 746 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 DNAI1Q9UI46 699 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 FAM184BQ9ULE4 1060 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 ASXL1Q8IXJ9 1541 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 NUP160Q12769 1436 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 MAST3O60307 1309 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 TMEM110-MUSTN1A8MSY1 372 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 HMGB1P1B2RPK0 211 aaPredicted RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 BRDTQ58F21 947 aaPredicted RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 IQUBQ8NA54 791 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 SWAP70Q9UH65 585 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 TEX14Q8IWB6 1497 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 PARP1P09874 1014 aaKnown RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 SDSP20132 328 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 GJC1P36383 396 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 PLS1Q14651 629 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 NBPF14Q5TI25 921 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 GIMAP6Q6P9H5 292 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 CROCCP2Q86T23 111 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 ATRIPQ8WXE1 791 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 ZC3H12CQ9C0D7 883 aaKnown RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 FANCAO15360 1455 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 LAMC3Q9Y6N6 1575 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 CIB2O75838 187 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 STK10O94804 968 aaKnown RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 LDHBP07195 334 aaKnown RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 HCLS1P14317 486 aaPredicted RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 CNGA1P29973 690 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 SMTNP53814 917 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 SLC4A8Q2Y0W8 1093 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 C20orf194Q5TEA3 1177 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 RAB11FIP4Q86YS3 637 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 CCDC94Q9BW85 323 aaPredicted RBP7.28□□□□□ -1.24
UPF2-201ENST00000356352 DENND2AQ9ULE3 1009 aa7.28□□□□□ -1.24
UPF2-201ENST00000356352 WDR7Q9Y4E6 1490 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 SH3BP5O60239 455 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 INF2Q27J81 1249 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 SV2BQ7L1I2 683 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 NBPF11Q86T75 865 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 USP48Q86UV5 1035 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 CDAN1Q8IWY9 1227 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 ZNF710Q8N1W2 664 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 ZSWIM4Q9H7M6 989 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 HELLSQ9NRZ9 838 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 CNPY2Q9Y2B0 182 aa7.27□□□□□ -1.24
UPF2-201ENST00000356352 EIF2AK4Q9P2K8 1649 aaKnown RBP7.27□□□□□ -1.25
UPF2-201ENST00000356352 CALUO43852 315 aaPredicted RBP7.27□□□□□ -1.25
UPF2-201ENST00000356352 STX10O60499 249 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 MAP7Q14244 749 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 LIN9Q5TKA1 542 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 HAUS3Q68CZ6 603 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 DZIP3Q86Y13 1208 aaKnown RBP7.27□□□□□ -1.25
UPF2-201ENST00000356352 LARP6Q9BRS8 491 aaKnown RBP7.27□□□□□ -1.25
UPF2-201ENST00000356352 RTCBQ9Y3I0 505 aaKnown RBP7.27□□□□□ -1.25
UPF2-201ENST00000356352 ZFYVE9O95405 1425 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 NMIQ13287 307 aaPredicted RBP7.27□□□□□ -1.25
UPF2-201ENST00000356352 NOLC1Q14978 699 aaKnown RBP eCLIP7.27□□□□□ -1.25
UPF2-201ENST00000356352 DDB1Q16531 1140 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 PPIP5K1Q6PFW1 1433 aa7.27□□□□□ -1.25
UPF2-201ENST00000356352 VEZTQ9HBM0 779 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms