RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 MB21D2Q8IYB1 491 aaPredicted RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 ZNF830Q96NB3 372 aaPredicted RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 PIH1D3Q9NQM4 214 aaKnown RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 DENND2AQ9ULE3 1009 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 DOT1LQ8TEK3 1739 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 ADD2P35612 726 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 PHKA1P46020 1223 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 ILDR1Q86SU0 546 aaPredicted RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 HELBQ8NG08 1087 aaPredicted RBP18.17■□□□□ 0.5
UPF3B-202ENST00000345865 NBPF3Q9H094 633 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 ROBO1Q9Y6N7 1651 aa18.17■□□□□ 0.5
UPF3B-202ENST00000345865 TYRO3Q06418 890 aa18.16■□□□□ 0.5
UPF3B-202ENST00000345865 RBM43Q6ZSC3 357 aaKnown RBP18.16■□□□□ 0.5
UPF3B-202ENST00000345865 ZNF512BQ96KM6 892 aaPredicted RBP18.16■□□□□ 0.5
UPF3B-202ENST00000345865 TNMDQ9H2S6 317 aa18.16■□□□□ 0.5
UPF3B-202ENST00000345865 WNK3Q9BYP7 1800 aa18.16■□□□□ 0.5
UPF3B-202ENST00000345865 SLC9C2Q5TAH2 1124 aa18.16■□□□□ 0.5
UPF3B-202ENST00000345865 CCDC102BQ68D86 513 aa18.16■□□□□ 0.5
UPF3B-202ENST00000345865 CLSTN2Q9H4D0 955 aa18.16■□□□□ 0.5
UPF3B-202ENST00000345865 DDX60Q8IY21 1712 aaKnown RBP18.15■□□□□ 0.5
UPF3B-202ENST00000345865 CARMIL3Q8ND23 1372 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 SNAP23O00161 211 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 PRC1O43663 620 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 INTS5Q6P9B9 1019 aaKnown RBP18.15■□□□□ 0.5
UPF3B-202ENST00000345865 BICD2Q8TD16 824 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 DDX19AQ9NUU7 478 aaKnown RBP18.15■□□□□ 0.5
UPF3B-202ENST00000345865 CFAP45Q9UL16 551 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 HPS5Q9UPZ3 1129 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 EIF5P55010 431 aaKnown RBP18.15■□□□□ 0.5
UPF3B-202ENST00000345865 PLCB2Q00722 1185 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 USP28Q96RU2 1077 aa18.15■□□□□ 0.5
UPF3B-202ENST00000345865 SUSD4Q5VX71 490 aa18.14■□□□□ 0.49
UPF3B-202ENST00000345865 RAB11FIP4Q86YS3 637 aa18.14■□□□□ 0.49
UPF3B-202ENST00000345865 RCOR1Q9UKL0 485 aa18.14■□□□□ 0.49
UPF3B-202ENST00000345865 ZNF213O14771 459 aa18.14■□□□□ 0.49
UPF3B-202ENST00000345865 FGFR2P21802 821 aa18.14■□□□□ 0.49
UPF3B-202ENST00000345865 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.14■□□□□ 0.49
UPF3B-202ENST00000345865 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.14■□□□□ 0.49
UPF3B-202ENST00000345865 COL22A1Q8NFW1 1626 aaPredicted RBP18.13■□□□□ 0.49
UPF3B-202ENST00000345865 FAM177BA6PVY3 158 aa18.13■□□□□ 0.49
UPF3B-202ENST00000345865 IDH1O75874 414 aaKnown RBP18.13■□□□□ 0.49
UPF3B-202ENST00000345865 ARID4AP29374 1257 aaPredicted RBP18.13■□□□□ 0.49
UPF3B-202ENST00000345865 OTUD7BQ6GQQ9 843 aa18.13■□□□□ 0.49
UPF3B-202ENST00000345865 LUZP1Q86V48 1076 aa18.13■□□□□ 0.49
UPF3B-202ENST00000345865 FAM200AQ8TCP9 573 aa18.13■□□□□ 0.49
UPF3B-202ENST00000345865 TTC12Q9H892 705 aaPredicted RBP18.13■□□□□ 0.49
UPF3B-202ENST00000345865 WWC3Q9ULE0 1092 aa18.13■□□□□ 0.49
UPF3B-202ENST00000345865 LRP5O75197 1615 aa18.13■□□□□ 0.49
UPF3B-202ENST00000345865 KLF18A0A0U1RQI7 1052 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 NCOA7Q8NI08 942 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 ACSBG1Q96GR2 724 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 ZNF532Q9HCE3 1301 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 ATRNO75882 1429 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 TCRBV5S4A2TA0A5A2 114 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 ANO6Q4KMQ2 910 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 TBC1D10CQ8IV04 446 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 GOLPH3LQ9H4A5 285 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 SEC31BQ9NQW1 1179 aa18.12■□□□□ 0.49
UPF3B-202ENST00000345865 UBE3CQ15386 1083 aa18.11■□□□□ 0.49
UPF3B-202ENST00000345865 KIF3AQ9Y496 699 aa18.11■□□□□ 0.49
UPF3B-202ENST00000345865 MYH14Q7Z406 1995 aaKnown RBP18.11■□□□□ 0.49
UPF3B-202ENST00000345865 A0A0G2JS52 829 aa18.11■□□□□ 0.49
UPF3B-202ENST00000345865 PDE6AP16499 860 aa18.11■□□□□ 0.49
UPF3B-202ENST00000345865 CRKLP46109 303 aaKnown RBP18.11■□□□□ 0.49
UPF3B-202ENST00000345865 TTF1Q15361 905 aaPredicted RBP18.11■□□□□ 0.49
UPF3B-202ENST00000345865 PUM3Q15397 648 aaKnown RBP18.11■□□□□ 0.49
UPF3B-202ENST00000345865 CBX8Q9HC52 389 aa18.11■□□□□ 0.49
UPF3B-202ENST00000345865 GJB4Q9NTQ9 266 aa18.11■□□□□ 0.49
UPF3B-202ENST00000345865 GOLGA8BA8MQT2 603 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 ADAMTS2O95450 1211 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 ZSCAN25Q6NSZ9 544 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 LPIN2Q92539 896 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 AHDC1Q5TGY3 1603 aaPredicted RBP18.1■□□□□ 0.49
UPF3B-202ENST00000345865 ITPK1Q13572 414 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 CYB5R4Q7L1T6 521 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 RALYLQ86SE5 291 aaKnown RBP18.1■□□□□ 0.49
UPF3B-202ENST00000345865 CCDC87Q9NVE4 849 aa18.1■□□□□ 0.49
UPF3B-202ENST00000345865 R3HCC1Q9Y3T6 440 aaKnown RBP18.1■□□□□ 0.49
UPF3B-202ENST00000345865 SPATA31A1Q5TZJ5 1347 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 ARAP2Q8WZ64 1704 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 ATP6V1AP38606 617 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 SNW1Q13573 536 aaKnown RBP18.09■□□□□ 0.49
UPF3B-202ENST00000345865 CCAR1Q8IX12 1150 aaKnown RBP18.09■□□□□ 0.49
UPF3B-202ENST00000345865 MARCH10Q8NA82 808 aaPredicted RBP18.09■□□□□ 0.49
UPF3B-202ENST00000345865 MROH5Q6ZUA9 1318 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 CAMTA2O94983 1202 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 DDB1Q16531 1140 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 SENP2Q9HC62 589 aa18.09■□□□□ 0.49
UPF3B-202ENST00000345865 APPP05067 770 aa18.08■□□□□ 0.48
UPF3B-202ENST00000345865 KIAA2012Q0VF49 1180 aa18.08■□□□□ 0.48
UPF3B-202ENST00000345865 RASGRF1Q13972 1273 aa18.08■□□□□ 0.48
UPF3B-202ENST00000345865 STRBPQ96SI9 672 aaKnown RBP18.08■□□□□ 0.48
UPF3B-202ENST00000345865 INCENPQ9NQS7 918 aa18.08■□□□□ 0.48
UPF3B-202ENST00000345865 C4AP0C0L4 1744 aa18.08■□□□□ 0.48
UPF3B-202ENST00000345865 C4BP0C0L5 1744 aa18.08■□□□□ 0.48
UPF3B-202ENST00000345865 LOC102724428A0A0B4J2F2 783 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 UQCRFS1P1P0C7P4 283 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 SIK1P57059 783 aa18.07■□□□□ 0.48
UPF3B-202ENST00000345865 C17orf53Q8N3J3 647 aaPredicted RBP18.07■□□□□ 0.48
UPF3B-202ENST00000345865 SPATA5Q8NB90 893 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms