RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LIMCH1Q9UPQ0 1083 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 CHRNDQ07001 517 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 DNAI2Q9GZS0 605 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 ATP10DQ9P241 1426 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 SSBP05455 408 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP54-201ENST00000339859 BACH2Q9BYV9 841 aa11.81□□□□□ -0.52
USP54-201ENST00000339859 RBM27Q9P2N5 1060 aaKnown RBP11.81□□□□□ -0.52
USP54-201ENST00000339859 ZNF804BA4D1E1 1349 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 CPDO75976 1380 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 NBPF7P0C2Y1 421 aaPredicted RBP11.8□□□□□ -0.52
USP54-201ENST00000339859 CHMP4BP1P59074 171 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 AS3MTQ9HBK9 375 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 MBD3O95983 291 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 TIMM10P62072 90 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 PCDHB15Q9Y5E8 787 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 TRIM21P19474 475 aaKnown RBP11.8□□□□□ -0.52
USP54-201ENST00000339859 DCAF15Q66K64 600 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 USP48Q86UV5 1035 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 TTF2Q9UNY4 1162 aaKnown RBP11.8□□□□□ -0.52
USP54-201ENST00000339859 SEMA3EO15041 775 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 CIAO1O76071 339 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 MFSD14BQ5SR56 506 aa11.8□□□□□ -0.52
USP54-201ENST00000339859 RLBP1P12271 317 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 UBE4AQ14139 1066 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 SULF1Q8IWU6 871 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 RRP36Q96EU6 259 aaKnown RBP11.79□□□□□ -0.52
USP54-201ENST00000339859 ABCC4O15439 1325 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 ZBTB43O43298 467 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 GRAPQ13588 217 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 RTN1Q16799 776 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 GRAPLQ8TC17 118 aaPredicted RBP11.79□□□□□ -0.52
USP54-201ENST00000339859 ESYT1Q9BSJ8 1104 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 TNNQ9UQP3 1299 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 CSADQ9Y600 493 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 DOK7Q18PE1 504 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 MICU3Q86XE3 530 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 SPATA32Q96LK8 384 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 RBM8AQ9Y5S9 174 aaKnown RBP11.79□□□□□ -0.52
USP54-201ENST00000339859 NRKQ7Z2Y5 1582 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 RC3H1Q5TC82 1133 aaKnown RBP11.79□□□□□ -0.52
USP54-201ENST00000339859 GOPCQ9HD26 462 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 FIBPO43427 364 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 DBNDD2Q9BQY9 259 aa11.79□□□□□ -0.52
USP54-201ENST00000339859 RAB3GAP1Q15042 981 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 KLHDC4Q8TBB5 520 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 ZBTB7AO95365 584 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 CCDC144CPQ8IYA2 1237 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 CCDC82Q8N4S0 544 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 FILIP1LQ4L180 1135 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 TTLL5Q6EMB2 1281 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 SMARCC2Q8TAQ2 1214 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 USP40Q9NVE5 1235 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 RBM28Q9NW13 759 aaKnown RBP11.78□□□□□ -0.52
USP54-201ENST00000339859 AATFQ9NY61 560 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP54-201ENST00000339859 IQSEC2Q5JU85 1478 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 PLEKHG2Q9H7P9 1386 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 PROSER3Q2NL68 480 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 HOMER1Q86YM7 354 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 APPBP2Q92624 585 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 SLC26A6Q9BXS9 759 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 GREM2Q9H772 168 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 LRRC7Q96NW7 1537 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 ADGRB1O14514 1584 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 CD163L1Q9NR16 1453 aa11.78□□□□□ -0.52
USP54-201ENST00000339859 CYP19A1P11511 503 aaPredicted RBP11.78□□□□□ -0.52
USP54-201ENST00000339859 CCT2P78371 535 aaKnown RBP11.78□□□□□ -0.52
USP54-201ENST00000339859 ARMT1Q9H993 441 aa11.77□□□□□ -0.52
USP54-201ENST00000339859 KLF18A0A0U1RQI7 1052 aa11.77□□□□□ -0.53
USP54-201ENST00000339859 UPF3BQ9BZI7 483 aaKnown RBP11.77□□□□□ -0.53
USP54-201ENST00000339859 ARHGEF1Q92888 912 aaKnown RBP11.77□□□□□ -0.53
USP54-201ENST00000339859 PARP1P09874 1014 aaKnown RBP11.76□□□□□ -0.53
USP54-201ENST00000339859 TAOK3Q9H2K8 898 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 KCNQ2O43526 872 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP54-201ENST00000339859 PRAMEF22A3QJZ6 481 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 PRC1O43663 620 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 SYCP1Q15431 976 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 HEATR3Q7Z4Q2 680 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 SMC2O95347 1197 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 ZNF853P0CG23 659 aa11.76□□□□□ -0.53
USP54-201ENST00000339859 CT47A1Q5JQC4 288 aaPredicted RBP11.76□□□□□ -0.53
USP54-201ENST00000339859 BIN2Q9UBW5 565 aaPredicted RBP11.76□□□□□ -0.53
USP54-201ENST00000339859 ANAPC15P60006 121 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 C6orf50Q9HD87 102 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 VTI1AQ96AJ9 217 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 CIZ1Q9ULV3 898 aaPredicted RBP11.75□□□□□ -0.53
USP54-201ENST00000339859 SUSD4Q5VX71 490 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 ARPP21Q9UBL0 812 aaPredicted RBP11.75□□□□□ -0.53
USP54-201ENST00000339859 OFD1O75665 1012 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 PABPC4Q13310 644 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP54-201ENST00000339859 KIF22Q14807 665 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 PYM1Q9BRP8 204 aaKnown RBP11.75□□□□□ -0.53
USP54-201ENST00000339859 TANGO6Q9C0B7 1094 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 NAPAP54920 295 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 KIF20BQ96Q89 1820 aa11.75□□□□□ -0.53
USP54-201ENST00000339859 ARHGEF28Q8N1W1 1705 aaKnown RBP11.74□□□□□ -0.53
USP54-201ENST00000339859 R3HDM1Q15032 1099 aaKnown RBP11.74□□□□□ -0.53
USP54-201ENST00000339859 ERMNQ8TAM6 284 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 CALML4Q96GE6 196 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms