RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 KRT85P78386 507 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 GET4Q7L5D6 327 aaPredicted RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 PIK3C2GO75747 1445 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 PLB1Q6P1J6 1458 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 UHRF1BP1Q6BDS2 1440 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 TPPPO94811 219 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC159P0C7I6 412 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 AARSP49588 968 aaKnown RBP eCLIP4.7□□□□□ -1.665e-7■■■■■ 27.5
NEDD4-201ENST00000338963 TYRO3Q06418 890 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ACTN3Q08043 901 aaPredicted RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 MFSD4BQ5TF39 518 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 LRRC49Q8IUZ0 686 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 GALNT15Q8N3T1 639 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 FNBP4Q8N3X1 1017 aaPredicted RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ATP11CQ8NB49 1132 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 PANK1Q8TE04 598 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CDK5RAP3Q96JB5 506 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 TRAPPC9Q96Q05 1148 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SH3GL1Q99961 368 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CAPS2Q9BXY5 557 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 FAM204AQ9H8W3 233 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 PDE11AQ9HCR9 933 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ZFATQ9P243 1243 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 LARSQ9P2J5 1176 aaKnown RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 BARX2Q9UMQ3 279 aaPredicted RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SAMD9Q5K651 1589 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CTTNBP2Q8WZ74 1663 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 KDM1AO60341 852 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 KRT38O76015 456 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 GSTA2P09210 222 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ANKRD13AQ8IZ07 590 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ZBTB10Q96DT7 871 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 VCPKMTQ9H867 229 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SPATA7Q9P0W8 599 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC162PA2VCL2 907 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 NDUFAB1O14561 156 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CUL4AQ13619 759 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CUL4BQ13620 913 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 TBC1D25Q3MII6 688 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SOGA3Q5TF21 947 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 TSGA10Q9BZW7 698 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CENPHQ9H3R5 247 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ZEB2O60315 1214 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC166P0CW27 439 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ZSCAN22P10073 491 aaPredicted RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 FLT3P36888 993 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 AMPHP49418 695 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 MSANTD4Q8NCY6 345 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC148Q8NFR7 591 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SMARCC2Q8TAQ2 1214 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ARHGAP45Q92619 1136 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 DDX27Q96GQ7 796 aaKnown RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CLSTN2Q9H4D0 955 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 RTL1A6NKG5 1358 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 LRRIQ3A6PVS8 624 aaPredicted RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 E7ENQ6 273 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 RNF187Q5TA31 235 aaPredicted RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 MTHFD1LQ6UB35 978 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 MIS12Q9H081 205 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 RALGAPBQ86X10 1494 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 STXBP3O00186 592 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 BIRC5O15392 142 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ZNF165P49910 485 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 LONRF3Q496Y0 759 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CEP128Q6ZU80 1094 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 PABPN1Q86U42 306 aaKnown RBP eCLIP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ITPRIPQ8IWB1 547 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 CACTIN-AS1Q8N1I8 211 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 NOC3LQ8WTT2 800 aaKnown RBP4.7□□□□□ -1.66
NEDD4-201ENST00000338963 TEKT4Q8WW24 435 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SMC6Q96SB8 1091 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 PARD6BQ9BYG5 372 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 ADAMTS8Q9UP79 889 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 SLC4A7Q9Y6M7 1214 aa4.7□□□□□ -1.66
NEDD4-201ENST00000338963 NPTXRO95502 500 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 MYL1P05976 194 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 GHRP10912 638 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 RARSP54136 660 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 TSNAXIP1Q2TAA8 658 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ATXN10Q9UBB4 475 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 RAB21Q9UL25 225 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ABCC2Q92887 1545 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 SHOX2O60902 331 aaPredicted RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 PYGBP11216 843 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 CHMP4BP1P59074 171 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 IFT88Q13099 833 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 INF2Q27J81 1249 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 CFAP61Q8NHU2 1237 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 RBM33Q96EV2 1170 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 TEX14Q8IWB6 1497 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 KDM5DQ9BY66 1539 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 CFAP73A6NFT4 308 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 F8VZ95 297 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 BCRP11274 1271 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 TUBA4AP68366 448 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 CKAP4Q07065 602 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 RIPK1Q13546 671 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 SYNE3Q6ZMZ3 975 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 FBF1Q8TES7 1133 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 PPP2R3CQ969Q6 453 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms