RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ZNF202O95125 648 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 RXRAP19793 462 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 NECTIN1Q15223 517 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 TXLNBQ8N3L3 684 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 ORAI2Q96SN7 254 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 CRACR2AQ9BSW2 395 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 E7EWF7 191 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 CDR1P51861 262 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 CABLES1Q8TDN4 633 aa16.9■□□□□ 0.3
TCOF1-201ENST00000323668 AFMP43652 599 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 CADPS2Q86UW7 1296 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 TRIM34Q9BYJ4 488 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 TANGO6Q9C0B7 1094 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 PFKFB2O60825 505 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 APPBP2Q92624 585 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 PDE4CQ08493 712 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 MAP9Q49MG5 647 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 COPRSQ9NQ92 184 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 BMP15O95972 392 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 CCDC191Q8NCU4 936 aa16.89■□□□□ 0.29
TCOF1-201ENST00000323668 FANCCQ00597 558 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 ADALQ6DHV7 355 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 KRI1Q8N9T8 703 aaKnown RBP16.88■□□□□ 0.29
TCOF1-201ENST00000323668 ZNF594Q96JF6 807 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-201ENST00000323668 CTAGE1Q96RT6 745 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 PYM1Q9BRP8 204 aaKnown RBP16.88■□□□□ 0.29
TCOF1-201ENST00000323668 H0YHG0 523 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 FAM193AP78312 1265 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 TDRD7Q8NHU6 1098 aaKnown RBP16.88■□□□□ 0.29
TCOF1-201ENST00000323668 ZNF274Q96GC6 653 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-201ENST00000323668 MRFAP1L1Q96HT8 127 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 TLR7Q9NYK1 1049 aaKnown RBP16.88■□□□□ 0.29
TCOF1-201ENST00000323668 NRXN1Q9ULB1 1477 aa16.88■□□□□ 0.29
TCOF1-201ENST00000323668 CCDC175P0C221 793 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 SPA17Q15506 151 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 ANGEL1Q9UNK9 670 aaKnown RBP16.87■□□□□ 0.29
TCOF1-201ENST00000323668 ALKQ9UM73 1620 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 TRIM75PA6NK02 468 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 KIF20AO95235 890 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 HAUS7Q99871 368 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 PPRC1Q5VV67 1664 aaKnown RBP16.87■□□□□ 0.29
TCOF1-201ENST00000323668 CCDC194A0A1B0GVG4 234 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 ESR2Q92731 530 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 SLC4A4Q9Y6R1 1079 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 MCM3P25205 808 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 C19orf44Q9H6X5 657 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 KIAA1468Q9P260 1216 aa16.87■□□□□ 0.29
TCOF1-201ENST00000323668 NLRP12P59046 1061 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 TIGD1Q96MW7 591 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
TCOF1-201ENST00000323668 GPAA1O43292 621 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 KRT18P05783 430 aaKnown RBP16.86■□□□□ 0.29
TCOF1-201ENST00000323668 ZNF589Q86UQ0 364 aaPredicted RBP16.86■□□□□ 0.29
TCOF1-201ENST00000323668 TRERF1Q96PN7 1200 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 NRBP1Q9UHY1 535 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 ELF2Q15723 593 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 LRRC8AQ8IWT6 810 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 XAGE2Q96GT9 111 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 TTC14Q96N46 770 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 ARHGEF40Q8TER5 1519 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 SPAG1Q07617 926 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 DHX58Q96C10 678 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 BMP2KQ9NSY1 1161 aaPredicted RBP16.86■□□□□ 0.29
TCOF1-201ENST00000323668 ZNF652Q9Y2D9 606 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 PLEKHG1Q9ULL1 1385 aa16.86■□□□□ 0.29
TCOF1-201ENST00000323668 FKBP15Q5T1M5 1219 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 MYSM1Q5VVJ2 828 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 NUTM2AQ8IVF1 878 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-201ENST00000323668 MKNK2Q9HBH9 465 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 KCNH3Q9ULD8 1083 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 CYP21A2P08686 494 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 FAM89AQ96GI7 184 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 BAG1Q99933 345 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-201ENST00000323668 XPO4Q9C0E2 1151 aaKnown RBP16.85■□□□□ 0.29
TCOF1-201ENST00000323668 UBA7P41226 1012 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 SCRN1Q12765 414 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 TMEM87BQ96K49 555 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.85■□□□□ 0.295e-7■■■□□ 16.3
TCOF1-201ENST00000323668 A2ML1A8K2U0 1454 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 B4E1Z4 1266 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 NLRP1Q9C000 1473 aa16.85■□□□□ 0.29
TCOF1-201ENST00000323668 SASH1O94885 1247 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 LMAN1P49257 510 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 BICDL1Q6ZP65 573 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 HSPD1P10809 573 aaKnown RBP16.84■□□□□ 0.29
TCOF1-201ENST00000323668 RRAGBQ5VZM2 374 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 PTPRMP28827 1452 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 A1BGP04217 495 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 SSBP05455 408 aaKnown RBP eCLIP16.84■□□□□ 0.29
TCOF1-201ENST00000323668 CYP7A1P22680 504 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 GOLGA1Q92805 767 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 TSPYL1Q9H0U9 437 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 ATP10DQ9P241 1426 aa16.84■□□□□ 0.29
TCOF1-201ENST00000323668 GABPB1Q06547 395 aaPredicted RBP16.84■□□□□ 0.29
TCOF1-201ENST00000323668 INO80Q9ULG1 1556 aaPredicted RBP16.83■□□□□ 0.29
TCOF1-201ENST00000323668 KIF5BP33176 963 aa16.83■□□□□ 0.29
TCOF1-201ENST00000323668 MTX1Q13505 466 aa16.83■□□□□ 0.29
TCOF1-201ENST00000323668 KARSQ15046 597 aaKnown RBP16.83■□□□□ 0.29
TCOF1-201ENST00000323668 HELBQ8NG08 1087 aaPredicted RBP16.83■□□□□ 0.29
TCOF1-201ENST00000323668 MCM6Q14566 821 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms