RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ARID4AP29374 1257 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 ATP11AP98196 1134 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 KANK3Q6NY19 840 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 FAM184BQ9ULE4 1060 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 REREQ9P2R6 1566 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 RTL1A6NKG5 1358 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 CIB2O75838 187 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 ARL1P40616 181 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 CLNS1AP54105 237 aaKnown RBP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 MCMDC2Q4G0Z9 681 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 CCDC194A0A1B0GVG4 234 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 HOXB7P09629 217 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 CPLX4Q7Z7G2 160 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 CHL1O00533 1208 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 IFNL2Q8IZJ0 200 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 ZNF830Q96NB3 372 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 CAMSAP1Q5T5Y3 1602 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 METAP2P50579 478 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL6A3-201ENST00000295550 STMN2Q93045 179 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 TCERG1LQ5VWI1 586 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 ZRANB1Q9UGI0 708 aa11.18□□□□□ -0.62
COL6A3-201ENST00000295550 KRT13P13646 458 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 TFIP11Q9UBB9 837 aaKnown RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 AKR1B10O60218 316 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 TACC1O75410 805 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 NECAB1Q8N987 351 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 SYNCQ9H7C4 482 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 BUB1BO60566 1050 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 MAP3K9P80192 1104 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CREB3L3Q68CJ9 461 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 TTC12Q9H892 705 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 EXOC1Q9NV70 894 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 DNAI1Q9UI46 699 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 N4BP3O15049 544 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 ATL3Q6DD88 541 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CTCFLQ8NI51 663 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CAPZA3Q96KX2 299 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 TERF1P54274 439 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 ANKRD13DQ6ZTN6 518 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 B4GALNT4Q76KP1 1039 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CCDC172P0C7W6 258 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 GUCY1B3Q02153 619 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CCDC77Q9BR77 488 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 UBASH3AP57075 661 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 Q6ZUG5 572 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CEP120Q8N960 986 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CCDC85AQ96PX6 553 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 MKRN1Q9UHC7 482 aaKnown RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 USP16Q9Y5T5 823 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 OTUD7AQ8TE49 926 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CALML4Q96GE6 196 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 CTAGE1Q96RT6 745 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 SETDB1Q15047 1291 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 LINS1Q8NG48 757 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 BRF1Q92994 677 aa11.17□□□□□ -0.62
COL6A3-201ENST00000295550 GBP1P32455 592 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 CUL5Q93034 780 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 ADGRB3O60242 1522 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 TUBB4BP68371 445 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 ORC3Q9UBD5 711 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-201ENST00000295550 ZNF652Q9Y2D9 606 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 SYCP3Q8IZU3 236 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 SYT1P21579 422 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 GTF3C6Q969F1 213 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 DZIP1Q86YF9 867 aaKnown RBP11.16□□□□□ -0.62
COL6A3-201ENST00000295550 IFT74Q96LB3 600 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 TRIM47Q96LD4 638 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 AMPD3Q01432 767 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-201ENST00000295550 TEX13AQ9BXU3 409 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-201ENST00000295550 FEZ2Q9UHY8 353 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-201ENST00000295550 CCDC102BQ68D86 513 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 RRAGDQ9NQL2 400 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-201ENST00000295550 AATKQ6ZMQ8 1374 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 CATIPQ7Z7H3 387 aa11.16□□□□□ -0.62
COL6A3-201ENST00000295550 HDXQ7Z353 690 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 TTC16Q8NEE8 873 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 PLEKHF1Q96S99 279 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 PAG1Q9NWQ8 432 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 DACT1Q9NYF0 836 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 SLU7O95391 586 aaKnown RBP11.15□□□□□ -0.62
COL6A3-201ENST00000295550 PRPHP41219 470 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 SYKP43405 635 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 CCDC63Q8NA47 563 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 PRC1O43663 620 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 RGS12O14924 1447 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 KIF20BQ96Q89 1820 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 SEPT14Q6ZU15 432 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 ZSCAN29Q8IWY8 852 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-201ENST00000295550 PCK1P35558 622 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 IARSP41252 1262 aaKnown RBP11.15□□□□□ -0.62
COL6A3-201ENST00000295550 TMEM67Q5HYA8 995 aa11.15□□□□□ -0.62
COL6A3-201ENST00000295550 MINDY4BA8MYZ0 360 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 RBSNQ9H1K0 784 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 PTCH1Q13635 1447 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 MLH3Q9UHC1 1453 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 PHACTR2O75167 634 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 ISM2Q6H9L7 571 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms