RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CTNNA3Q9UI47 895 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 MROH5Q6ZUA9 1318 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 ITGB4P16144 1822 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 PDE6AP16499 860 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 AHDC1Q5TGY3 1603 aaPredicted RBP13.56□□□□□ -0.24
CUX1-202ENST00000292538 AMIGO3Q86WK7 504 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 ANKRD18AQ8IVF6 992 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 ARMT1Q9H993 441 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 LTBP4Q8N2S1 1624 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 GOLGA6L4A6NEF3 574 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 HMGB1P09429 215 aaKnown RBP13.56□□□□□ -0.24
CUX1-202ENST00000292538 ADD2P35612 726 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 PLCB2Q00722 1185 aa13.56□□□□□ -0.24
CUX1-202ENST00000292538 PRC1O43663 620 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 PDCP20941 246 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 TRDNQ13061 729 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 TTF1Q15361 905 aaPredicted RBP13.55□□□□□ -0.24
CUX1-202ENST00000292538 FOXP2O15409 715 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 PRKAB2O43741 272 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 MBD4O95243 580 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 MAP3K12Q12852 859 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 OTUD7BQ6GQQ9 843 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 ZSCAN25Q6NSZ9 544 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.55□□□□□ -0.24
CUX1-202ENST00000292538 CELF1Q92879 486 aaKnown RBP13.55□□□□□ -0.24
CUX1-202ENST00000292538 RAI14Q9P0K7 980 aa13.55□□□□□ -0.24
CUX1-202ENST00000292538 TULP1O00294 542 aaPredicted RBP13.54□□□□□ -0.24
CUX1-202ENST00000292538 UQCRFS1P1P0C7P4 283 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 CAMK4Q16566 473 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 CDC5LQ99459 802 aaKnown RBP13.54□□□□□ -0.24
CUX1-202ENST00000292538 RTCBQ9Y3I0 505 aaKnown RBP13.54□□□□□ -0.24
CUX1-202ENST00000292538 NUP188Q5SRE5 1749 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 PAPPAQ13219 1627 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 PTPDC1A2A3K4 754 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 CTDSPL2Q05D32 466 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 MPNDQ8N594 471 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 TFCP2L1Q9NZI6 479 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 TJP1Q07157 1748 aa13.54□□□□□ -0.24
CUX1-202ENST00000292538 KLF18A0A0U1RQI7 1052 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 SLC4A8Q2Y0W8 1093 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 SLC51AQ86UW1 340 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 SYAP1Q96A49 352 aaPredicted RBP13.53□□□□□ -0.24
CUX1-202ENST00000292538 GOLGA8BA8MQT2 603 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 B4E1Z4 1266 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 HSPA1LP34931 641 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 RFC4P35249 363 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 KRT85P78386 507 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 NKX2-3Q8TAU0 364 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 CPLX1O14810 134 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 PDIA3P30101 505 aaKnown RBP13.53□□□□□ -0.24
CUX1-202ENST00000292538 CHAF1AQ13111 956 aaPredicted RBP13.53□□□□□ -0.24
CUX1-202ENST00000292538 GIMAP6Q6P9H5 292 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 NFXL1Q6ZNB6 911 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 NCOA7Q8NI08 942 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 ZKSCAN3Q9BRR0 538 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 NAPBQ9H115 298 aa13.53□□□□□ -0.24
CUX1-202ENST00000292538 RFX7Q2KHR2 1363 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 JCADQ9P266 1359 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 BCL9LQ86UU0 1499 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 DOT1LQ8TEK3 1739 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 FGFR2P21802 821 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 MCM5P33992 734 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 TDO2P48775 406 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 ZNF445P59923 1031 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 EXOSC10Q01780 885 aaKnown RBP13.52□□□□□ -0.24
CUX1-202ENST00000292538 ARHGEF1Q92888 912 aaKnown RBP13.52□□□□□ -0.24
CUX1-202ENST00000292538 SPATA32Q96LK8 384 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 MYL10Q9BUA6 226 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 FTOQ9C0B1 505 aaKnown RBP eCLIP13.52□□□□□ -0.24
CUX1-202ENST00000292538 GJB4Q9NTQ9 266 aa13.52□□□□□ -0.24
CUX1-202ENST00000292538 UBE2HP62256 183 aa13.52□□□□□ -0.25
CUX1-202ENST00000292538 LRSAM1Q6UWE0 723 aa13.52□□□□□ -0.25
CUX1-202ENST00000292538 CCDC82Q8N4S0 544 aa13.52□□□□□ -0.25
CUX1-202ENST00000292538 NLRP3Q96P20 1036 aa13.52□□□□□ -0.25
CUX1-202ENST00000292538 SLIT2O94813 1529 aa13.52□□□□□ -0.25
CUX1-202ENST00000292538 MINDY4BA8MYZ0 360 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 KLRK1P26718 216 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 FAM196AQ6ZSG2 479 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 TBC1D10CQ8IV04 446 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 SLC4A4Q9Y6R1 1079 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 LRP6O75581 1613 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 CTDNEP1O95476 244 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 CYP7A1P22680 504 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 ARID4AP29374 1257 aaPredicted RBP13.51□□□□□ -0.25
CUX1-202ENST00000292538 TTC6Q86TZ1 520 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 NSUN7Q8NE18 718 aaKnown RBP13.51□□□□□ -0.25
CUX1-202ENST00000292538 SDR42E1Q8WUS8 393 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 GJD4Q96KN9 370 aaPredicted RBP13.51□□□□□ -0.25
CUX1-202ENST00000292538 AK7Q96M32 723 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 BCL2L12Q9HB09 334 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 AFF2P51816 1311 aa13.51□□□□□ -0.25
CUX1-202ENST00000292538 PFKFB2O60825 505 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 MICU3Q86XE3 530 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 SEPT12Q8IYM1 358 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 FNBP4Q8N3X1 1017 aaPredicted RBP13.5□□□□□ -0.25
CUX1-202ENST00000292538 BICD2Q8TD16 824 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 CAVIN4Q5BKX8 364 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 CLEC4GQ6UXB4 293 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 LCORLQ8N3X6 602 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 CHMP4CQ96CF2 233 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms