RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 ALS2Q96Q42 1657 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 PRC1O43663 620 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 FGAP02671 866 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 ATF3P18847 181 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 EXOSC10Q01780 885 aaKnown RBP10.66□□□□□ -0.7
MSH4-201ENST00000263187 ZMYM1Q5SVZ6 1142 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 TOM1L2Q6ZVM7 507 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 C8orf76Q96K31 380 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 TMX1Q9H3N1 280 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 CEP126Q9P2H0 1117 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 SNAP23O00161 211 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 EYA2O00167 538 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 LMOD1P29536 600 aaPredicted RBP10.65□□□□□ -0.7
MSH4-201ENST00000263187 FAM160A1Q05DH4 1040 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 CCDC57Q2TAC2 916 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 SPECC1Q5M775 1068 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 RBM43Q6ZSC3 357 aaKnown RBP10.65□□□□□ -0.7
MSH4-201ENST00000263187 PHKBQ93100 1093 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 KAT6BQ8WYB5 2073 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 CARMIL3Q8ND23 1372 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 KIF28PB7ZC32 967 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 TMC6Q7Z403 805 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 HELBQ8NG08 1087 aaPredicted RBP10.65□□□□□ -0.7
MSH4-201ENST00000263187 XAGE2Q96GT9 111 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 ZNF396Q96N95 335 aaPredicted RBP10.65□□□□□ -0.7
MSH4-201ENST00000263187 ALDH8A1Q9H2A2 487 aaPredicted RBP10.65□□□□□ -0.7
MSH4-201ENST00000263187 SENP2Q9HC62 589 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 IFNKQ9P0W0 207 aa10.65□□□□□ -0.7
MSH4-201ENST00000263187 ZSCAN20P17040 1043 aaPredicted RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 ZNF215Q9UL58 517 aaPredicted RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 COL16A1Q07092 1604 aaPredicted RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 NCAPD2Q15021 1401 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 H7C1W4 665 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 IDH1O75874 414 aaKnown RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 ATP2B1P20020 1258 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 PTPN14Q15678 1187 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 CEP57L1Q8IYX8 460 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 FAM177A1Q8N128 213 aaPredicted RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 MRPS27Q92552 414 aaKnown RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 HMGB1P09429 215 aaKnown RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 IL15P40933 162 aaPredicted RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 GNL2Q13823 731 aaKnown RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 MICU3Q86XE3 530 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 XPO4Q9C0E2 1151 aaKnown RBP10.64□□□□□ -0.71
MSH4-201ENST00000263187 HELLSQ9NRZ9 838 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 ANO10Q9NW15 660 aa10.64□□□□□ -0.71
MSH4-201ENST00000263187 N4BP2Q86UW6 1770 aaPredicted RBP10.63□□□□□ -0.71
MSH4-201ENST00000263187 RGPD5Q99666 1765 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 ATP1A3P13637 1013 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 CCDC158Q5M9N0 1113 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 NAA16Q6N069 864 aaPredicted RBP10.63□□□□□ -0.71
MSH4-201ENST00000263187 SYNE3Q6ZMZ3 975 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 RALYLQ86SE5 291 aaKnown RBP10.63□□□□□ -0.71
MSH4-201ENST00000263187 CADPS2Q86UW7 1296 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 ENGASEQ8NFI3 743 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 CLIC6Q96NY7 704 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 SH3TC1Q8TE82 1336 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 CMTR1Q8N1G2 835 aaKnown RBP10.63□□□□□ -0.71
MSH4-201ENST00000263187 DSCC1Q9BVC3 393 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 PALLDQ8WX93 1383 aa10.63□□□□□ -0.71
MSH4-201ENST00000263187 SMTNL1A8MU46 457 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 FOXP2O15409 715 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 IMMTQ16891 758 aaKnown RBP10.62□□□□□ -0.71
MSH4-201ENST00000263187 LRRN4CLQ8ND94 238 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 TOMM22Q9NS69 142 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 JCADQ9P266 1359 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 COL22A1Q8NFW1 1626 aaPredicted RBP10.62□□□□□ -0.71
MSH4-201ENST00000263187 LMO7Q8WWI1 1683 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 PHLPP1O60346 1717 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 ABCA3Q99758 1704 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 SPTLC2O15270 562 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 SMAP1Q8IYB5 467 aaPredicted RBP10.62□□□□□ -0.71
MSH4-201ENST00000263187 FMR1NBQ8N0W7 255 aaPredicted RBP10.62□□□□□ -0.71
MSH4-201ENST00000263187 LLPHQ9BRT6 129 aaKnown RBP10.62□□□□□ -0.71
MSH4-201ENST00000263187 ZNF213O14771 459 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 GPAA1O43292 621 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 ANTXR2P58335 489 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 ELF2Q15723 593 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 LINC00301Q8NCQ3 95 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 ANKRD7Q92527 254 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 PRDM11Q9NQV5 511 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 C5P01031 1676 aa10.62□□□□□ -0.71
MSH4-201ENST00000263187 CTIFO43310 598 aaKnown RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 WDHD1O75717 1129 aaPredicted RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 ZNF202O95125 648 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 SLC3A2P08195 630 aaKnown RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 CCZ1BP86790 482 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 CCZ1P86791 482 aaPredicted RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 RRP12Q5JTH9 1297 aaKnown RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 METTL24Q5JXM2 366 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 NBPF11Q86T75 865 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 ZKSCAN3Q9BRR0 538 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 B4E1Z4 1266 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 PDIA4P13667 645 aaKnown RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 SLC9C2Q5TAH2 1124 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 NFXL1Q6ZNB6 911 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.61□□□□□ -0.71
MSH4-201ENST00000263187 HPS5Q9UPZ3 1129 aa10.61□□□□□ -0.71
MSH4-201ENST00000263187 PNOCQ13519 176 aa10.6□□□□□ -0.71
MSH4-201ENST00000263187 MYSM1Q5VVJ2 828 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms