RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TYRO3Q06418 890 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 HSP90AA4PQ58FG1 418 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 SLC9C2Q5TAH2 1124 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 C19orf44Q9H6X5 657 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 SLC4A8Q2Y0W8 1093 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 CREB3L3Q68CJ9 461 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 GLT8D2Q9H1C3 349 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 CWF19L2Q2TBE0 894 aaKnown RBP21.72■■□□□ 1.07
UPF1-201ENST00000262803 CALCOCO1Q9P1Z2 691 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 RBM17Q96I25 401 aaKnown RBP21.71■■□□□ 1.07
UPF1-201ENST00000262803 KRT79Q5XKE5 535 aa21.71■■□□□ 1.07
UPF1-201ENST00000262803 DZIP3Q86Y13 1208 aaKnown RBP21.71■■□□□ 1.07
UPF1-201ENST00000262803 MAST3O60307 1309 aa21.71■■□□□ 1.07
UPF1-201ENST00000262803 ATP2A1O14983 1001 aa21.71■■□□□ 1.07
UPF1-201ENST00000262803 GTF2F1P35269 517 aaKnown RBP eCLIP21.71■■□□□ 1.075e-6■■□□□ 13.8
UPF1-201ENST00000262803 LRRC59Q96AG4 307 aaKnown RBP21.71■■□□□ 1.07
UPF1-201ENST00000262803 ATL3Q6DD88 541 aa21.7■■□□□ 1.07
UPF1-201ENST00000262803 TTC6Q86TZ1 520 aa21.7■■□□□ 1.07
UPF1-201ENST00000262803 MAP3K5Q99683 1374 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 KIAA1524Q8TCG1 905 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 JADE2Q9NQC1 790 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 TRIM75PA6NK02 468 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 SPTLC2O15270 562 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 RNF113AO15541 343 aaKnown RBP21.7■■□□□ 1.06
UPF1-201ENST00000262803 DNAI1Q9UI46 699 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 PARP10Q53GL7 1025 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 HEATR3Q7Z4Q2 680 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 EYA1Q99502 592 aa21.7■■□□□ 1.06
UPF1-201ENST00000262803 COL17A1Q9UMD9 1497 aaPredicted RBP21.69■■□□□ 1.06
UPF1-201ENST00000262803 ABCC10Q5T3U5 1492 aa21.69■■□□□ 1.06
UPF1-201ENST00000262803 LMOD1P29536 600 aaPredicted RBP21.69■■□□□ 1.06
UPF1-201ENST00000262803 IQSEC3Q9UPP2 1182 aaPredicted RBP21.69■■□□□ 1.06
UPF1-201ENST00000262803 PRPF4BQ13523 1007 aaKnown RBP21.69■■□□□ 1.06
UPF1-201ENST00000262803 HS2ST1Q7LGA3 356 aa21.69■■□□□ 1.06
UPF1-201ENST00000262803 KRT83P78385 493 aa21.68■■□□□ 1.06
UPF1-201ENST00000262803 NSRP1Q9H0G5 558 aaKnown RBP21.68■■□□□ 1.06
UPF1-201ENST00000262803 DENND2AQ9ULE3 1009 aa21.68■■□□□ 1.06
UPF1-201ENST00000262803 BCCIPQ9P287 314 aaKnown RBP eCLIP21.68■■□□□ 1.06
UPF1-201ENST00000262803 RTL1A6NKG5 1358 aa21.68■■□□□ 1.06
UPF1-201ENST00000262803 HS1BP3Q53T59 392 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 CTR9Q6PD62 1173 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 BRAPQ7Z569 592 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 KRT2P35908 639 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 RUFY3Q7L099 469 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 CHST3Q7LGC8 479 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 CEP83Q9Y592 693 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 ABCC1P33527 1531 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 ASXL2Q76L83 1435 aa21.67■■□□□ 1.06
UPF1-201ENST00000262803 DKC1O60832 514 aaKnown RBP eCLIP21.66■■□□□ 1.06
UPF1-201ENST00000262803 HSF2BPO75031 334 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 TACC1O75410 805 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 APOBRQ0VD83 1088 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 PPP1R14CQ8TAE6 165 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 CEP63Q96MT8 703 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 SYT1P21579 422 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 SIRT1Q96EB6 747 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 SRRTQ9BXP5 876 aaKnown RBP21.66■■□□□ 1.06
UPF1-201ENST00000262803 FAM13AO94988 1023 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 NFATC2IPQ8NCF5 419 aa21.66■■□□□ 1.06
UPF1-201ENST00000262803 ASIC1P78348 528 aa21.65■■□□□ 1.06
UPF1-201ENST00000262803 MAP3K9P80192 1104 aa21.65■■□□□ 1.06
UPF1-201ENST00000262803 DHX32Q7L7V1 743 aaKnown RBP21.65■■□□□ 1.06
UPF1-201ENST00000262803 TRERF1Q96PN7 1200 aa21.65■■□□□ 1.06
UPF1-201ENST00000262803 PTPDC1A2A3K4 754 aa21.65■■□□□ 1.06
UPF1-201ENST00000262803 LDHBP07195 334 aaKnown RBP21.65■■□□□ 1.06
UPF1-201ENST00000262803 UBE4AQ14139 1066 aa21.65■■□□□ 1.06
UPF1-201ENST00000262803 IQCGQ9H095 443 aaKnown RBP21.65■■□□□ 1.06
UPF1-201ENST00000262803 CLEC11AQ9Y240 323 aa21.65■■□□□ 1.06
UPF1-201ENST00000262803 TFCP2Q12800 502 aa21.64■■□□□ 1.06
UPF1-201ENST00000262803 KRT222Q8N1A0 295 aa21.64■■□□□ 1.06
UPF1-201ENST00000262803 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.64■■□□□ 1.063e-7■■■■■ 31
UPF1-201ENST00000262803 PODXL2Q9NZ53 605 aa21.64■■□□□ 1.06
UPF1-201ENST00000262803 RPL13P26373 211 aaKnown RBP21.64■■□□□ 1.05
UPF1-201ENST00000262803 G2E3Q7L622 706 aa21.64■■□□□ 1.05
UPF1-201ENST00000262803 MAATS1Q7Z4T9 603 aa21.64■■□□□ 1.05
UPF1-201ENST00000262803 OTUD7AQ8TE49 926 aaPredicted RBP21.64■■□□□ 1.05
UPF1-201ENST00000262803 KDM2BQ8NHM5 1336 aa21.64■■□□□ 1.05
UPF1-201ENST00000262803 NPC1L1Q9UHC9 1359 aa21.64■■□□□ 1.05
UPF1-201ENST00000262803 PZPP20742 1482 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 TTC14Q96N46 770 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 RNF216Q9NWF9 866 aaPredicted RBP21.63■■□□□ 1.05
UPF1-201ENST00000262803 IRS4O14654 1257 aaPredicted RBP21.63■■□□□ 1.05
UPF1-201ENST00000262803 HOXB7P09629 217 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 GIMAP7Q8NHV1 300 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 HELLSQ9NRZ9 838 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 SHANK2Q9UPX8 1470 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 CFAP43Q8NDM7 1665 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 MAPK8IP2Q13387 824 aaPredicted RBP21.63■■□□□ 1.05
UPF1-201ENST00000262803 CEP128Q6ZU80 1094 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 CCDC117Q8IWD4 279 aaPredicted RBP21.63■■□□□ 1.05
UPF1-201ENST00000262803 BRDTQ58F21 947 aaPredicted RBP21.63■■□□□ 1.05
UPF1-201ENST00000262803 VTI1AQ96AJ9 217 aa21.63■■□□□ 1.05
UPF1-201ENST00000262803 CPA1P15085 419 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 ARFGAP3Q9NP61 516 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 MAP3K19Q56UN5 1328 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 TUBBP07437 444 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 CCDC14Q49A88 953 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 TRMT1LQ7Z2T5 733 aaKnown RBP21.62■■□□□ 1.05
UPF1-201ENST00000262803 DHX58Q96C10 678 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 PTGS1P23219 599 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms