RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 CDCA7Q9BWT1 371 aaPredicted RBP9.9□□□□□ -0.82
PTCD3-201ENST00000254630 ZNF165P49910 485 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 NCBP1Q09161 790 aaKnown RBP9.9□□□□□ -0.82
PTCD3-201ENST00000254630 JAG2Q9Y219 1238 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 LINS1Q8NG48 757 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 NAP1L4Q99733 375 aaKnown RBP9.9□□□□□ -0.82
PTCD3-201ENST00000254630 RASAL2Q9UJF2 1139 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 HSF2BPO75031 334 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 CAVIN2O95810 425 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 GCP02774 474 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 CHST3Q7LGC8 479 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 RGS22Q8NE09 1264 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 DDX12PQ92771 950 aa9.9□□□□□ -0.82
PTCD3-201ENST00000254630 CYLC1P35663 651 aaPredicted RBP9.9□□□□□ -0.83
PTCD3-201ENST00000254630 ZBTB21Q9ULJ3 1066 aa9.9□□□□□ -0.83
PTCD3-201ENST00000254630 CNBD1Q8NA66 436 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 FAM212AQ96EL1 285 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 TCEANC2Q96MN5 208 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 RAD50Q92878 1312 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 UFL1O94874 794 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 STK32BQ9NY57 414 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 BICDL2A1A5D9 508 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 MRPS9P82933 396 aaKnown RBP9.89□□□□□ -0.83
PTCD3-201ENST00000254630 AOPEPQ8N6M6 819 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 SELENOOQ9BVL4 669 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 CCNL1Q9UK58 526 aaPredicted RBP9.89□□□□□ -0.83
PTCD3-201ENST00000254630 GJA3Q9Y6H8 435 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 PLBD2Q8NHP8 589 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 PSMD1Q99460 953 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 NSFL1CQ9UNZ2 370 aaKnown RBP9.89□□□□□ -0.83
PTCD3-201ENST00000254630 PSMA7O14818 248 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 WWC3Q9ULE0 1092 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 PCDHB15Q9Y5E8 787 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 CEP170Q5SW79 1584 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 FSD2A1L4K1 749 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 RNF187Q5TA31 235 aaPredicted RBP9.89□□□□□ -0.83
PTCD3-201ENST00000254630 SSX2IPQ9Y2D8 614 aa9.89□□□□□ -0.83
PTCD3-201ENST00000254630 TRIM75PA6NK02 468 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 ACTN2P35609 894 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 KRT79Q5XKE5 535 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 TSPYL6Q8N831 410 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 IMPG2Q9BZV3 1241 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 SH2D4AQ9H788 454 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 ITGA6P23229 1130 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 HSPA2P54652 639 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 PUM3Q15397 648 aaKnown RBP9.88□□□□□ -0.83
PTCD3-201ENST00000254630 MBD4O95243 580 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 FERP16591 822 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 PRPHP41219 470 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 AK2P54819 239 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 KLHL40Q2TBA0 621 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 IKBKGQ9Y6K9 419 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 KIAA0753Q2KHM9 967 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 DPH6Q7L8W6 267 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 TMOD4Q9NZQ9 345 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 ARHGEF10O15013 1369 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 BBXQ8WY36 941 aaPredicted RBP9.88□□□□□ -0.83
PTCD3-201ENST00000254630 PLVAPQ9BX97 442 aa9.88□□□□□ -0.83
PTCD3-201ENST00000254630 SPTLC2O15270 562 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 POLR3GO15318 223 aaPredicted RBP9.87□□□□□ -0.83
PTCD3-201ENST00000254630 GNA11P29992 359 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 ZKSCAN3Q9BRR0 538 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 PICK1Q9NRD5 415 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 PZPP20742 1482 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 PTPDC1A2A3K4 754 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 GJC1P36383 396 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 DNM1Q05193 864 aaKnown RBP9.87□□□□□ -0.83
PTCD3-201ENST00000254630 SHROOM2Q13796 1616 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 VAMP4O75379 141 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 MAP3K9P80192 1104 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 RAB3GAP1Q15042 981 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 CEP112Q8N8E3 955 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 SREK1Q8WXA9 508 aaKnown RBP9.87□□□□□ -0.83
PTCD3-201ENST00000254630 SPAG5Q96R06 1193 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 METTL22Q9BUU2 404 aaPredicted RBP9.87□□□□□ -0.83
PTCD3-201ENST00000254630 PAXBP1Q9Y5B6 917 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 ECM2O94769 699 aaPredicted RBP9.87□□□□□ -0.83
PTCD3-201ENST00000254630 KCNA6P17658 529 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 GNG11P61952 73 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 PARP10Q53GL7 1025 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 HSP90AA4PQ58FG1 418 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 TEX11Q8IYF3 940 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 SNX21Q969T3 373 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 AKR1B10O60218 316 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 RXRAP19793 462 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 CBX1P83916 185 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 SPAG1Q07617 926 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 SPECC1Q5M775 1068 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 GGA1Q9UJY5 639 aa9.87□□□□□ -0.83
PTCD3-201ENST00000254630 PDE8AO60658 829 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 BRAPQ7Z569 592 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 APBB1IPQ7Z5R6 666 aaPredicted RBP9.86□□□□□ -0.83
PTCD3-201ENST00000254630 CCDC155Q8N6L0 562 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 GPCPD1Q9NPB8 672 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 MAST3O60307 1309 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 UBXN1Q04323 297 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 KRT24Q2M2I5 525 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 TNNQ9UQP3 1299 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 A0A1W2PRG0 241 aa9.86□□□□□ -0.83
PTCD3-201ENST00000254630 DTHD1Q6ZMT9 781 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms