RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 NOL10Q9BSC4 688 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 DENND2AQ9ULE3 1009 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 ZNF202O95125 648 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 KIF20AO95235 890 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 ATP5JP18859 108 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 GNG11P61952 73 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 PNOCQ13519 176 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 TRMT44Q8IYL2 757 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 CMTR1Q8N1G2 835 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 ZCCHC17Q9NP64 241 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 RNF216Q9NWF9 866 aaPredicted RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 DDX41Q9UJV9 622 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 COBLO75128 1261 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 A1BGP04217 495 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 GPTP24298 496 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 GYS2P54840 703 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 MTX1Q13505 466 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 KBTBD3Q8NAB2 608 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 C19orf44Q9H6X5 657 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 INCENPQ9NQS7 918 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 CEP126Q9P2H0 1117 aa13.87□□□□□ -0.19
USHBP1-201ENST00000252597 A0A1B0GUL7 405 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 CCZ1BP86790 482 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 CCZ1P86791 482 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-201ENST00000252597 TTLL7Q6ZT98 887 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 DESI2Q9BSY9 194 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 METTL22Q9BUU2 404 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-201ENST00000252597 COL15A1P39059 1388 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 TOP1P11387 765 aaKnown RBP13.86□□□□□ -0.19
USHBP1-201ENST00000252597 TATP17735 454 aaPredicted RBP13.86□□□□□ -0.19
USHBP1-201ENST00000252597 SYKP43405 635 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 TMCO3Q6UWJ1 677 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 PPP1R13BQ96KQ4 1090 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 KIAA1468Q9P260 1216 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 RCOR1Q9UKL0 485 aa13.86□□□□□ -0.19
USHBP1-201ENST00000252597 PFKFB2O60825 505 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 FANCCQ00597 558 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 IMMTQ16891 758 aaKnown RBP13.85□□□□□ -0.19
USHBP1-201ENST00000252597 NEK11Q8NG66 645 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ERO1AQ96HE7 468 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 MRFAP1L1Q96HT8 127 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ZNF335Q9H4Z2 1342 aaPredicted RBP13.85□□□□□ -0.19
USHBP1-201ENST00000252597 UBE2Q2LH0YL09 131 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ADORA1P30542 326 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 TRIM29Q14134 588 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 OLFM4Q6UX06 510 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 KCNH5Q8NCM2 988 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ZKSCAN3Q9BRR0 538 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ZNF609O15014 1411 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 TMEM232C9JQI7 657 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ADKP55263 362 aaKnown RBP13.85□□□□□ -0.19
USHBP1-201ENST00000252597 ARMCX5Q6P1M9 558 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 NUP133Q8WUM0 1156 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 DPF2Q92785 391 aa13.85□□□□□ -0.19
USHBP1-201ENST00000252597 M0R2C6 588 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 PFKFB1P16118 471 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 STX17P56962 302 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 E4F1Q66K89 784 aaPredicted RBP13.84□□□□□ -0.19
USHBP1-201ENST00000252597 TMEM94Q12767 1356 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 ZNF213O14771 459 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 HOXB7P09629 217 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 GSDMDP57764 484 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 CCDC57Q2TAC2 916 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 CCDC158Q5M9N0 1113 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 CNNM3Q8NE01 707 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 HELBQ8NG08 1087 aaPredicted RBP13.84□□□□□ -0.19
USHBP1-201ENST00000252597 OSBP2Q969R2 916 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 ALG1Q9BT22 464 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 LZTFL1Q9NQ48 299 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 NEMFO60524 1076 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 BABAM1Q9NWV8 329 aa13.84□□□□□ -0.19
USHBP1-201ENST00000252597 HMGB1P09429 215 aaKnown RBP13.83□□□□□ -0.2
USHBP1-201ENST00000252597 FAM89AQ96GI7 184 aa13.83□□□□□ -0.2
USHBP1-201ENST00000252597 PUF60Q9UHX1 559 aaKnown RBP13.83□□□□□ -0.2
USHBP1-201ENST00000252597 MAST3O60307 1309 aa13.83□□□□□ -0.2
USHBP1-201ENST00000252597 USP42Q9H9J4 1324 aaKnown RBP13.83□□□□□ -0.2
USHBP1-201ENST00000252597 hCG_1642624A0A1W2PR95 340 aa13.83□□□□□ -0.2
USHBP1-201ENST00000252597 GRAMD1CQ8IYS0 662 aa13.83□□□□□ -0.2
USHBP1-201ENST00000252597 HAUS7Q99871 368 aa13.83□□□□□ -0.2
USHBP1-201ENST00000252597 FANCLQ9NW38 375 aa13.83□□□□□ -0.2
USHBP1-201ENST00000252597 ARGLU1Q9NWB6 273 aaPredicted RBP13.83□□□□□ -0.2
USHBP1-201ENST00000252597 CARMIL3Q8ND23 1372 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 FOXN1O15353 648 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 SNRPA1P09661 255 aaKnown RBP13.82□□□□□ -0.2
USHBP1-201ENST00000252597 CLCN6P51797 869 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 TERF2Q15554 542 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 MYSM1Q5VVJ2 828 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 PLCD3Q8N3E9 789 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 MTMR7Q9Y216 660 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 RGPD1P0DJD0 1748 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 B4E1Z4 1266 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 KIF28PB7ZC32 967 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 FGAP02671 866 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 RBM6P78332 1123 aaKnown RBP13.82□□□□□ -0.2
USHBP1-201ENST00000252597 PDIA6Q15084 440 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 NAA16Q6N069 864 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-201ENST00000252597 SLC26A6Q9BXS9 759 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 MED23Q9ULK4 1368 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 RNF113AO15541 343 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms