RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 GTF3C6Q969F1 213 aa27.56■■■□□ 2
MSX2-201ENST00000239243 AGXT2Q9BYV1 514 aa27.56■■■□□ 2
MSX2-201ENST00000239243 ZNF532Q9HCE3 1301 aa27.56■■■□□ 2
MSX2-201ENST00000239243 FOXP2O15409 715 aa27.56■■■□□ 2
MSX2-201ENST00000239243 UBE4AQ14139 1066 aa27.56■■■□□ 2
MSX2-201ENST00000239243 A0A1B0GUL6 1792 aa27.55■■■□□ 2
MSX2-201ENST00000239243 TRAPPC3LQ5T215 181 aa27.55■■■□□ 2
MSX2-201ENST00000239243 C3orf67Q6ZVT6 689 aa27.55■■■□□ 2
MSX2-201ENST00000239243 CHMP4CQ96CF2 233 aa27.55■■■□□ 2
MSX2-201ENST00000239243 C4AP0C0L4 1744 aa27.55■■■□□ 2
MSX2-201ENST00000239243 RFC4P35249 363 aa27.55■■■□□ 2
MSX2-201ENST00000239243 BRF1Q92994 677 aa27.55■■■□□ 2
MSX2-201ENST00000239243 QTRT2Q9H974 415 aaKnown RBP27.55■■■□□ 2
MSX2-201ENST00000239243 TTLL5Q6EMB2 1281 aa27.54■■■□□ 2
MSX2-201ENST00000239243 SMIM5Q71RC9 77 aa27.54■■■□□ 2
MSX2-201ENST00000239243 FBXL16Q8N461 479 aa27.54■■■□□ 2
MSX2-201ENST00000239243 MYO5AQ9Y4I1 1855 aaKnown RBP27.54■■■□□ 2
MSX2-201ENST00000239243 TCRBV5S4A2TA0A5A2 114 aa27.53■■■□□ 2
MSX2-201ENST00000239243 SNAP23O00161 211 aa27.53■■■□□ 2
MSX2-201ENST00000239243 ADRA2BP18089 450 aa27.53■■■□□ 2
MSX2-201ENST00000239243 GNL3LQ9NVN8 582 aaKnown RBP27.53■■■□□ 2
MSX2-201ENST00000239243 MTMR6Q9Y217 621 aa27.53■■■□□ 2
MSX2-201ENST00000239243 ZNF213O14771 459 aa27.53■■■□□ 2
MSX2-201ENST00000239243 BCAMP50895 628 aa27.53■■■□□ 2
MSX2-201ENST00000239243 LARP1BQ659C4 914 aaKnown RBP27.53■■■□□ 2
MSX2-201ENST00000239243 NCLP19338 710 aaKnown RBP27.52■■■□□ 2
MSX2-201ENST00000239243 STK3Q13188 491 aa27.52■■■□□ 2
MSX2-201ENST00000239243 AIDAQ96BJ3 306 aa27.52■■■□□ 2
MSX2-201ENST00000239243 WWC3Q9ULE0 1092 aa27.52■■■□□ 2
MSX2-201ENST00000239243 COL4A1P02462 1669 aa27.51■■■□□ 2
MSX2-201ENST00000239243 LLPHQ9BRT6 129 aaKnown RBP27.51■■□□□ 1.99
MSX2-201ENST00000239243 MINPP1Q9UNW1 487 aa27.51■■□□□ 1.99
MSX2-201ENST00000239243 ZNF804BA4D1E1 1349 aa27.51■■□□□ 1.99
MSX2-201ENST00000239243 MRE11P49959 708 aa27.51■■□□□ 1.99
MSX2-201ENST00000239243 FAM196AQ6ZSG2 479 aa27.51■■□□□ 1.99
MSX2-201ENST00000239243 TMEM87AQ8NBN3 555 aa27.51■■□□□ 1.99
MSX2-201ENST00000239243 A0A0G2JLW4 131 aa27.5■■□□□ 1.99
MSX2-201ENST00000239243 PFKFB2O60825 505 aa27.5■■□□□ 1.99
MSX2-201ENST00000239243 NCOA7Q8NI08 942 aa27.5■■□□□ 1.99
MSX2-201ENST00000239243 CHAMP1Q96JM3 812 aa27.5■■□□□ 1.99
MSX2-201ENST00000239243 ZMYM6O95789 1325 aa27.5■■□□□ 1.99
MSX2-201ENST00000239243 CARMIL3Q8ND23 1372 aa27.5■■□□□ 1.99
MSX2-201ENST00000239243 RPS8P62241 208 aaKnown RBP27.49■■□□□ 1.99
MSX2-201ENST00000239243 CAVIN4Q5BKX8 364 aa27.49■■□□□ 1.99
MSX2-201ENST00000239243 LRRC2Q9BYS8 371 aa27.49■■□□□ 1.99
MSX2-201ENST00000239243 VPS37CA5D8V6 355 aaPredicted RBP27.49■■□□□ 1.99
MSX2-201ENST00000239243 CSPP1Q1MSJ5 1256 aa27.49■■□□□ 1.99
MSX2-201ENST00000239243 CAVIN1Q6NZI2 390 aaKnown RBP27.49■■□□□ 1.99
MSX2-201ENST00000239243 RALYLQ86SE5 291 aaKnown RBP27.49■■□□□ 1.99
MSX2-201ENST00000239243 MAGEB6Q8N7X4 407 aa27.49■■□□□ 1.99
MSX2-201ENST00000239243 GPT2Q8TD30 523 aa27.49■■□□□ 1.99
MSX2-201ENST00000239243 CELF1Q92879 486 aaKnown RBP27.49■■□□□ 1.99
MSX2-201ENST00000239243 WDR19Q8NEZ3 1342 aa27.49■■□□□ 1.99
MSX2-201ENST00000239243 HMGB2P26583 209 aaKnown RBP27.48■■□□□ 1.99
MSX2-201ENST00000239243 MCM5P33992 734 aa27.48■■□□□ 1.99
MSX2-201ENST00000239243 HAND2P61296 217 aa27.48■■□□□ 1.99
MSX2-201ENST00000239243 AMIGO3Q86WK7 504 aa27.48■■□□□ 1.99
MSX2-201ENST00000239243 ZNF274Q96GC6 653 aaPredicted RBP27.48■■□□□ 1.99
MSX2-201ENST00000239243 ANKRD2Q9GZV1 360 aa27.48■■□□□ 1.99
MSX2-201ENST00000239243 NPHP1O15259 732 aa27.48■■□□□ 1.99
MSX2-201ENST00000239243 SLC27A3Q5K4L6 730 aa27.48■■□□□ 1.99
MSX2-201ENST00000239243 STRBPQ96SI9 672 aaKnown RBP27.48■■□□□ 1.99
MSX2-201ENST00000239243 PHF14O94880 888 aa27.47■■□□□ 1.99
MSX2-201ENST00000239243 APPP05067 770 aa27.47■■□□□ 1.99
MSX2-201ENST00000239243 ALX1Q15699 326 aa27.47■■□□□ 1.99
MSX2-201ENST00000239243 TRDNQ13061 729 aa27.47■■□□□ 1.99
MSX2-201ENST00000239243 TAF1P21675 1872 aa27.46■■□□□ 1.99
MSX2-201ENST00000239243 GNAT2P19087 354 aa27.46■■□□□ 1.99
MSX2-201ENST00000239243 LRP2BPQ9P2M1 347 aa27.46■■□□□ 1.99
MSX2-201ENST00000239243 KIF3AQ9Y496 699 aa27.46■■□□□ 1.99
MSX2-201ENST00000239243 EVCP57679 992 aa27.45■■□□□ 1.99
MSX2-201ENST00000239243 ZNF445P59923 1031 aa27.45■■□□□ 1.99
MSX2-201ENST00000239243 APOBRQ0VD83 1088 aa27.45■■□□□ 1.99
MSX2-201ENST00000239243 SCRN1Q12765 414 aa27.45■■□□□ 1.99
MSX2-201ENST00000239243 FOXD4L6Q3SYB3 417 aaPredicted RBP27.45■■□□□ 1.99
MSX2-201ENST00000239243 FOXD4L3Q6VB84 417 aaPredicted RBP27.45■■□□□ 1.99
MSX2-201ENST00000239243 LRRC4BQ9NT99 713 aa27.45■■□□□ 1.99
MSX2-201ENST00000239243 HMGN5P82970 282 aaKnown RBP27.45■■□□□ 1.98
MSX2-201ENST00000239243 KRT27Q7Z3Y8 459 aa27.45■■□□□ 1.98
MSX2-201ENST00000239243 VPS37DQ86XT2 251 aa27.45■■□□□ 1.98
MSX2-201ENST00000239243 MB21D2Q8IYB1 491 aaPredicted RBP27.45■■□□□ 1.98
MSX2-201ENST00000239243 PATL2C9JE40 543 aaKnown RBP27.44■■□□□ 1.98
MSX2-201ENST00000239243 USP48Q86UV5 1035 aa27.44■■□□□ 1.98
MSX2-201ENST00000239243 GRPEL1Q9HAV7 217 aa27.44■■□□□ 1.98
MSX2-201ENST00000239243 SEMA3EO15041 775 aa27.44■■□□□ 1.98
MSX2-201ENST00000239243 SMARCC2Q8TAQ2 1214 aa27.44■■□□□ 1.98
MSX2-201ENST00000239243 SYAP1Q96A49 352 aaPredicted RBP27.44■■□□□ 1.98
MSX2-201ENST00000239243 DENND2AQ9ULE3 1009 aa27.44■■□□□ 1.98
MSX2-201ENST00000239243 PNPLA7Q6ZV29 1317 aa27.43■■□□□ 1.98
MSX2-201ENST00000239243 ZSCAN23Q3MJ62 389 aa27.43■■□□□ 1.98
MSX2-201ENST00000239243 PRC1O43663 620 aa27.43■■□□□ 1.98
MSX2-201ENST00000239243 MBD4O95243 580 aa27.43■■□□□ 1.98
MSX2-201ENST00000239243 GYG1P46976 350 aa27.43■■□□□ 1.98
MSX2-201ENST00000239243 CNPY2Q9Y2B0 182 aa27.43■■□□□ 1.98
MSX2-201ENST00000239243 UBR3Q6ZT12 1888 aa27.42■■□□□ 1.98
MSX2-201ENST00000239243 TCHHQ07283 1943 aa27.42■■□□□ 1.98
MSX2-201ENST00000239243 NFIXQ14938 502 aa27.42■■□□□ 1.98
MSX2-201ENST00000239243 FAM184AQ8NB25 1140 aa27.42■■□□□ 1.98
MSX2-201ENST00000239243 XRCC6P12956 609 aaKnown RBP eCLIP27.41■■□□□ 1.98
MSX2-201ENST00000239243 CNBD1Q8NA66 436 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms