RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 NECTIN1Q15223 517 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 MAP4K1Q92918 833 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 CNKSR1Q969H4 720 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 IRS2Q9Y4H2 1338 aa27.12■■□□□ 1.93
CDX1-201ENST00000231656 PRPF40BQ6NWY9 871 aaKnown RBP27.11■■□□□ 1.93
CDX1-201ENST00000231656 ATP2B4P23634 1241 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 CUL4AQ13619 759 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 RASGRF1Q13972 1273 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 FBXO33Q7Z6M2 555 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 KBTBD3Q8NAB2 608 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 CWC22Q9HCG8 908 aaKnown RBP27.1■■□□□ 1.93
CDX1-201ENST00000231656 HMG20BQ9P0W2 317 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 GGA1Q9UJY5 639 aa27.1■■□□□ 1.93
CDX1-201ENST00000231656 UFL1O94874 794 aa27.09■■□□□ 1.93
CDX1-201ENST00000231656 OLFM4Q6UX06 510 aa27.09■■□□□ 1.93
CDX1-201ENST00000231656 TXNRD3Q86VQ6 643 aa27.09■■□□□ 1.93
CDX1-201ENST00000231656 RBM8AQ9Y5S9 174 aaKnown RBP27.09■■□□□ 1.93
CDX1-201ENST00000231656 ZNF589Q86UQ0 364 aaPredicted RBP27.09■■□□□ 1.93
CDX1-201ENST00000231656 TICAM2Q86XR7 235 aa27.09■■□□□ 1.93
CDX1-201ENST00000231656 VPS37DQ86XT2 251 aa27.09■■□□□ 1.93
CDX1-201ENST00000231656 TTC14Q96N46 770 aa27.09■■□□□ 1.93
CDX1-201ENST00000231656 ZGPATQ8N5A5 531 aaKnown RBP27.08■■□□□ 1.93
CDX1-201ENST00000231656 SPATA5Q8NB90 893 aa27.08■■□□□ 1.93
CDX1-201ENST00000231656 GNL3LQ9NVN8 582 aaKnown RBP27.08■■□□□ 1.93
CDX1-201ENST00000231656 POLLQ9UGP5 575 aa27.08■■□□□ 1.93
CDX1-201ENST00000231656 A0A0G2JLW4 131 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 DPEP1P16444 411 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 HIBADHP31937 336 aaKnown RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 PTGER2P43116 358 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 TBC1D16Q8TBP0 767 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 TMX4Q9H1E5 349 aaPredicted RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 KIAA1551Q9HCM1 1747 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 CYP2E1P05181 493 aaPredicted RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 KCNA3P22001 575 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 CREB3L3Q68CJ9 461 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 C15orf52Q6ZUT6 534 aaKnown RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 GPR101Q96P66 508 aaPredicted RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 TM6SF1Q9BZW5 370 aa27.07■■□□□ 1.92
CDX1-201ENST00000231656 IQSEC3Q9UPP2 1182 aaPredicted RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 MYO5AQ9Y4I1 1855 aaKnown RBP27.07■■□□□ 1.92
CDX1-201ENST00000231656 MYH13Q9UKX3 1938 aa27.06■■□□□ 1.92
CDX1-201ENST00000231656 MPNDQ8N594 471 aa27.05■■□□□ 1.92
CDX1-201ENST00000231656 MYH7P12883 1935 aa27.05■■□□□ 1.92
CDX1-201ENST00000231656 DUOX1Q9NRD9 1551 aa27.05■■□□□ 1.92
CDX1-201ENST00000231656 TGFB2P61812 414 aa27.04■■□□□ 1.92
CDX1-201ENST00000231656 C7orf43Q8WVR3 580 aa27.04■■□□□ 1.92
CDX1-201ENST00000231656 C6orf229H3BNL8 230 aa27.04■■□□□ 1.92
CDX1-201ENST00000231656 CHGBP05060 677 aa27.04■■□□□ 1.92
CDX1-201ENST00000231656 NUCB2P80303 420 aa27.04■■□□□ 1.92
CDX1-201ENST00000231656 TTF1Q15361 905 aaPredicted RBP27.04■■□□□ 1.92
CDX1-201ENST00000231656 SLC27A2O14975 620 aa27.03■■□□□ 1.92
CDX1-201ENST00000231656 ADCK5Q3MIX3 580 aa27.03■■□□□ 1.92
CDX1-201ENST00000231656 DPP8Q6V1X1 898 aaPredicted RBP27.03■■□□□ 1.92
CDX1-201ENST00000231656 TTLL6Q8N841 843 aa27.03■■□□□ 1.92
CDX1-201ENST00000231656 INTS4Q96HW7 963 aaKnown RBP27.03■■□□□ 1.92
CDX1-201ENST00000231656 ZSWIM6Q9HCJ5 1215 aa27.03■■□□□ 1.92
CDX1-201ENST00000231656 CASTP20810 708 aaKnown RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 MCMDC2Q4G0Z9 681 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 CLEC17AQ6ZS10 378 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 NOL8Q76FK4 1167 aaKnown RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 JAKMIP1Q96N16 626 aaKnown RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 GBP4Q96PP9 640 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 PIH1D3Q9NQM4 214 aaKnown RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 ZNF219Q9P2Y4 722 aaPredicted RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 RPAP1Q9BWH6 1393 aaPredicted RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 COL1A1P02452 1464 aaPredicted RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 DDX11L8A8MPP1 907 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 SEMA3EO15041 775 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 ZKSCAN1P17029 563 aaPredicted RBP27.02■■□□□ 1.92
CDX1-201ENST00000231656 GSE1Q14687 1217 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 DENND2AQ9ULE3 1009 aa27.02■■□□□ 1.92
CDX1-201ENST00000231656 DOCK2Q92608 1830 aa27.01■■□□□ 1.91
CDX1-201ENST00000231656 AK2P54819 239 aa27.01■■□□□ 1.91
CDX1-201ENST00000231656 ZNF804AQ7Z570 1209 aa27.01■■□□□ 1.91
CDX1-201ENST00000231656 SEC62Q99442 399 aaKnown RBP27.01■■□□□ 1.91
CDX1-201ENST00000231656 PPP1R1BQ9UD71 204 aaPredicted RBP27.01■■□□□ 1.91
CDX1-201ENST00000231656 ZBTB22O15209 634 aa27■■□□□ 1.91
CDX1-201ENST00000231656 CD2APQ9Y5K6 639 aa27■■□□□ 1.91
CDX1-201ENST00000231656 HELLSQ9NRZ9 838 aa26.99■■□□□ 1.91
CDX1-201ENST00000231656 RNF113AO15541 343 aaKnown RBP26.99■■□□□ 1.91
CDX1-201ENST00000231656 CPA1P15085 419 aa26.99■■□□□ 1.91
CDX1-201ENST00000231656 LRRFIP1Q32MZ4 808 aaKnown RBP26.99■■□□□ 1.91
CDX1-201ENST00000231656 ZMYM1Q5SVZ6 1142 aa26.99■■□□□ 1.91
CDX1-201ENST00000231656 VPS53Q5VIR6 699 aa26.99■■□□□ 1.91
CDX1-201ENST00000231656 RNF20Q5VTR2 975 aa26.99■■□□□ 1.91
CDX1-201ENST00000231656 CCDC129Q6ZRS4 1044 aa26.99■■□□□ 1.91
CDX1-201ENST00000231656 BRCA1P38398 1863 aaKnown RBP26.98■■□□□ 1.91
CDX1-201ENST00000231656 SNED1Q8TER0 1413 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 PKP1Q13835 747 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 TSGA10IPQ3SY00 556 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 SLFNL1Q499Z3 407 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 CC2D2BQ6DHV5 1058 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 RUFY3Q7L099 469 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 TDRD7Q8NHU6 1098 aaKnown RBP26.98■■□□□ 1.91
CDX1-201ENST00000231656 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.98■■□□□ 1.91
CDX1-201ENST00000231656 SPON1Q9HCB6 807 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 CYP46A1Q9Y6A2 500 aa26.98■■□□□ 1.91
CDX1-201ENST00000231656 PDS5AQ29RF7 1337 aaKnown RBP26.98■■□□□ 1.91
CDX1-201ENST00000231656 C21orf2O43822 256 aa26.97■■□□□ 1.91
CDX1-201ENST00000231656 IDH1O75874 414 aaKnown RBP26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms