RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 Q96M66 194 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 TMEM59Q9BXS4 323 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 SELENOIQ9C0D9 397 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 GSX1Q9H4S2 264 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 C7orf69Q9H7B7 122 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 MMP26Q9NRE1 261 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 DUX4Q9UBX2 424 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 KPTNQ9Y664 436 aa13.7□□□□□ -0.22
SHKBP1-219ENST00000599575 hCG_1809904A0A1W2PP81 198 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 A0A1W2PPE2 198 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 A0A1W2PR64 198 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 A0A1W2PRV1 198 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 TMEM82A0PJX8 343 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 GEMIN2O14893 280 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 PSPNO60542 156 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 CA11O75493 328 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 GABARAPO95166 117 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 SELLP14151 372 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 RPL31P62899 125 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 RPS27AP62979 156 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 SCGB2A2Q13296 93 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 CR1LQ2VPA4 569 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 TMEM104Q8NE00 496 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 H1FXQ92522 213 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 NKX3-1Q99801 234 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 TM2D1Q9BX74 207 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 BARHL1Q9BZE3 327 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 RCC2Q9P258 522 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 METRNQ9UJH8 293 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 AUP1Q9Y679 476 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 ABCA2Q9BZC7 2435 aa13.69□□□□□ -0.22
SHKBP1-219ENST00000599575 TEP1Q99973 2627 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 hADV38S2A0JD32 116 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 M0R1W7 72 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 SIRPB1O00241 398 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 RBP4P02753 201 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 CALCBP10092 127 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 RAB6AP20340 208 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 FUT3P21217 361 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 OR3A1P47881 315 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 SNU13P55769 128 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 P2RX3P56373 397 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 SCN1BQ07699 218 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 BLMHQ13867 455 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 TAF9Q16594 264 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 C2orf76Q3KRA6 126 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 PAN3Q58A45 887 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 METTL11BQ5VVY1 283 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 SFXN4Q6P4A7 337 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 OR51D1Q8NGF3 324 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 TMPRSS13Q9BYE2 586 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 LIN7BQ9HAP6 207 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 RAB22AQ9UL26 194 aa13.68□□□□□ -0.22
SHKBP1-219ENST00000599575 YLPM1P49750 1951 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 TRAV24A0A0B4J272 114 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 A0A1W2PP11 408 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 A0A1W2PQ09 198 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 LDLRAD4O15165 306 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 MPIG6BO95866 241 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 TFF1P04155 84 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 TMBIM6P55061 237 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 OR10A3P58181 314 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 BPIFB3P59826 476 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 UNC119Q13432 240 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 FAM120AOSQ5T036 256 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 HES5Q5TA89 166 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 NR2C2APQ86WQ0 139 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 FAM89BQ8N5H3 189 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 OR4S1Q8NGB4 309 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 RAB2BQ8WUD1 216 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 DPCDQ9BVM2 203 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 BANF2Q9H503 90 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 UNKLQ9H9P5 680 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 LINC00312Q9Y6C7 94 aa13.67□□□□□ -0.22
SHKBP1-219ENST00000599575 METTL21EPA6NDL7 271 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 MCRIP1C9JLW8 97 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 PDCD6O75340 191 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 SCGNO76038 276 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 EDDM3BP56851 147 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 PDCD1Q15116 288 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 P2RY14Q15391 338 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 CTF1Q16619 201 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 GPR107Q5VW38 600 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 SLC16A12Q6ZSM3 486 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 SUMF2Q8NBJ7 301 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 OR56B1Q8NGI3 324 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 NANPQ8TBE9 248 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 CORO2AQ92828 525 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 FAM46BQ96A09 425 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 UPRTQ96BW1 309 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 WDFY2Q96P53 400 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 NEDD4LQ96PU5 975 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 BEX2Q9BXY8 128 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 PPA2Q9H2U2 334 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 METTL8Q9H825 291 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 OR6C3Q9NZP0 311 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 UBE2J1Q9Y385 318 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 ETV7Q9Y603 341 aa13.66□□□□□ -0.22
SHKBP1-219ENST00000599575 NIPBLQ6KC79 2804 aaeCLIP13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 POM121CA8CG34 1229 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms