RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SIRPB1O00241 398 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 SLC33A1O00400 549 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 LDLRAD4O15165 306 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 PDCD6O75340 191 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 CA11O75493 328 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 CSN2P05814 226 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 CD99P14209 185 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 SNRPBP14678 240 aaKnown RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 GATA3P23771 443 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 ERP29P30040 261 aaKnown RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 BLVRBP30043 206 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 VEGFCP49767 419 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 MRPS15P82914 257 aaKnown RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 MEF2CQ06413 473 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 UNC119Q13432 240 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 SPCS2Q15005 226 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 GRK1Q15835 563 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 TMEM249Q2WGJ8 235 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 OR10K2Q6IF99 312 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 BTNL3Q6UXE8 466 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 Q6ZTK2 550 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 NR2C2APQ86WQ0 139 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 OR8H2Q8N162 312 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 FAM89BQ8N5H3 189 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 ZNRF1Q8ND25 227 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 LGALS14Q8TCE9 139 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 ST8SIA4Q92187 359 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 C18orf12Q96KH6 178 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 NUDT16L1Q9BRJ7 211 aaKnown RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 DPCDQ9BVM2 203 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 RBM38Q9H0Z9 239 aaKnown RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 LPAR5Q9H1C0 372 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 ATG5Q9H1Y0 275 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 NCOR1P1Q9H4R4 102 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 RAB9BQ9NP90 201 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 PLEKHJ1Q9NW61 149 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 RHBDL2Q9NX52 303 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 HSF4Q9ULV5 492 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 POLR3KQ9Y2Y1 108 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 PEX16Q9Y5Y5 336 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 SETD2Q9BYW2 2564 aaPredicted RBP7.68□□□□□ -1.18
LDLR-210ENST00000559340 CSPG4Q6UVK1 2322 aa7.68□□□□□ -1.18
LDLR-210ENST00000559340 A0A075B6Q4 140 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 A0A096LNT2 108 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 hCG_1809904A0A1W2PP81 198 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 A0A1W2PPE2 198 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 A0A1W2PR64 198 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 A0A1W2PRV1 198 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 hADV38S2A0JD32 116 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 POM121CA8CG34 1229 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 SMAD7O15105 426 aaKnown RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 ENSAO43768 121 aaKnown RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 ZNF737O75373 536 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 APOA1P02647 267 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 MSMBP08118 114 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 AMY2BP19961 511 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 HOXA4Q00056 320 aaPredicted RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 UBE2NLQ5JXB2 153 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 ZNF841Q6ZN19 808 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 GLCCI1Q86VQ1 547 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 CMTM4Q8IZR5 234 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 TEX29Q8N6K0 151 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 FAM216BQ8N7L0 139 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 SUMF2Q8NBJ7 301 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 OR10R2Q8NGX6 335 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 DYNC2LI1Q8TCX1 351 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 C15orf40Q8WUR7 153 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 H1FXQ92522 213 aaKnown RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 RAB3CQ96E17 227 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 COX4I2Q96KJ9 171 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 TMUB1Q9BVT8 246 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 RIMS4Q9H426 269 aaPredicted RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 RCC2Q9P258 522 aaKnown RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 IL36RNQ9UBH0 155 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 COMMD3Q9UBI1 195 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 RABL2AQ9UBK7 228 aaPredicted RBP7.67□□□□□ -1.18
LDLR-210ENST00000559340 RABL2BQ9UNT1 228 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 A3GALT2U3KPV4 340 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 ACANP16112 2415 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 ABCA2Q9BZC7 2435 aa7.67□□□□□ -1.18
LDLR-210ENST00000559340 TRGV10A0A0A0MS01 117 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 A0A0B4J203 849 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 TRAV24A0A0B4J272 114 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 A0A1W2PQ09 198 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 TMEM82A0PJX8 343 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 TMEM30CPA0ZSE6 113 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 A6NHS1 94 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 FAM157AC9JC47 383 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 J3QLI3 93 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 PAHP00439 452 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 TGFAP01135 160 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 INHBBP09529 407 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 TALDO1P37837 337 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 RBMXP38159 391 aaKnown RBP7.66□□□□□ -1.18
LDLR-210ENST00000559340 OR3A1P47881 315 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 CEBPDP49716 269 aaPredicted RBP7.66□□□□□ -1.18
LDLR-210ENST00000559340 DVL1P1P54792 670 aaPredicted RBP7.66□□□□□ -1.18
LDLR-210ENST00000559340 EDDM3BP56851 147 aa7.66□□□□□ -1.18
LDLR-210ENST00000559340 RPL31P62899 125 aaKnown RBP7.66□□□□□ -1.18
LDLR-210ENST00000559340 LCN2P80188 198 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms