RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 FOXH1O75593 365 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 MSMBP08118 114 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 RAB6AP20340 208 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 GZMKP49863 264 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 NPY4RP50391 375 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 EDDM3AQ14507 147 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 GRK1Q15835 563 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 PAN3Q58A45 887 aaKnown RBP10.6□□□□□ -0.71
SHMT2-227ENST00000557269 ATAD3CQ5T2N8 411 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 CYB5R2Q6BCY4 276 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 RAB12Q6IQ22 244 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 LINC00596Q86U02 117 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 CROCCP3Q8IVE0 287 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 OR8H2Q8N162 312 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 TPRX1Q8N7U7 411 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 CHST4Q8NCG5 386 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 OR4M1Q8NGD0 313 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 PLPPR1Q8TBJ4 325 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 H1FXQ92522 213 aaKnown RBP10.6□□□□□ -0.71
SHMT2-227ENST00000557269 DPCDQ9BVM2 203 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-227ENST00000557269 FAM234AQ9H0X4 552 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 ING3Q9NXR8 418 aa10.6□□□□□ -0.71
SHMT2-227ENST00000557269 RCC2Q9P258 522 aaKnown RBP10.6□□□□□ -0.71
SHMT2-227ENST00000557269 POLR3KQ9Y2Y1 108 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-227ENST00000557269 CREBBPQ92793 2442 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 MALRD1Q5VYJ5 2156 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 SMIM31A0A1B0GVY4 71 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A10PA6NDY2 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A18PA6NE21 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A16PA6NEW6 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 A6NHS1 94 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A20PA6NIJ5 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A8PA6NJQ4 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A7PA6NKC0 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A22PA8MWA6 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A12PA8MX19 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A5PA8MXJ8 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A23PA8MXZ1 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 LY6G6DO95868 133 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 TGFAP01135 160 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A15PP0C7V4 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A13PP0C7W8 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A14PP0C7W9 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 FAM90A24PP0C7X0 464 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 ZNF182P17025 639 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-227ENST00000557269 CHATP28329 748 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 BLVRBP30043 206 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-227ENST00000557269 VEGFCP49767 419 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 TMEM50BP56557 158 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 AESQ08117 197 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 ATXN7L3Q14CW9 347 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-227ENST00000557269 PLAC9Q5JTB6 97 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 NKAPLQ5M9Q1 402 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 C6orf201Q7Z4U5 140 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 LY6G5BQ8NDX9 201 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 DYRK2Q92630 601 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 PTX4Q96A99 478 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 TMEM186Q96B77 213 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 COQ2Q96H96 371 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 DCTN5Q9BTE1 182 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 URM1Q9BTM9 101 aaKnown RBP10.59□□□□□ -0.71
SHMT2-227ENST00000557269 ATG5Q9H1Y0 275 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 GSX1Q9H4S2 264 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-227ENST00000557269 ABRACLQ9P1F3 81 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 RPUSD1Q9UJJ7 312 aaKnown RBP10.59□□□□□ -0.71
SHMT2-227ENST00000557269 SPATA2Q9UM82 520 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 PEX16Q9Y5Y5 336 aa10.59□□□□□ -0.71
SHMT2-227ENST00000557269 ACANP16112 2415 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 HIVEP1P15822 2718 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 ZANQ9Y493 2812 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 IGHV2-70DA0A0C4DH43 119 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 UBE2QL1A1L167 161 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 ZNF701M0R085 212 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-227ENST00000557269 RAB27BO00194 218 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 MGST3O14880 152 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 PDCD6O75340 191 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 FOSL1P15407 271 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 FUT3P21217 361 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 GLIPR1P48060 266 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 EDDM3BP56851 147 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 OLFML2AQ68BL7 652 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 TMEM200BQ69YZ2 307 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 GDPD3Q7L5L3 318 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 TCF23Q7RTU1 214 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 DTX3Q8N9I9 347 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 OR5D13Q8NGL4 314 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 RAB40AQ8WXH6 277 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 DGCR14Q96DF8 476 aaKnown RBP10.58□□□□□ -0.72
SHMT2-227ENST00000557269 SULT4A1Q9BR01 284 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 NUDT16L1Q9BRJ7 211 aaKnown RBP10.58□□□□□ -0.72
SHMT2-227ENST00000557269 FAAP24Q9BTP7 215 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 HIF1ANQ9NWT6 349 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 RHBDL2Q9NX52 303 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 COMMD3Q9UBI1 195 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 KCNK7Q9Y2U2 307 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 ETV7Q9Y603 341 aa10.58□□□□□ -0.72
SHMT2-227ENST00000557269 MAST4O15021 2626 aa10.57□□□□□ -0.72
SHMT2-227ENST00000557269 TRAV39A0A0B4J263 110 aa10.57□□□□□ -0.72
SHMT2-227ENST00000557269 TRAV20A0A0B4J274 112 aa10.57□□□□□ -0.72
SHMT2-227ENST00000557269 KIR2DS1A0A191URI9 304 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms