RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 BDH1Q02338 343 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 PAX5Q02548 391 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 IRF3Q14653 427 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 NHLRC3Q5JS37 347 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 ZNF626Q68DY1 528 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 OR5R1Q8NH85 324 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 PPP1R35Q8TAP8 253 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 PIFOQ8TCI5 191 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 TNFAIP8L1Q8WVP5 186 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 SGCDQ92629 289 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 NKX3-1Q99801 234 aaPredicted RBP11.52□□□□□ -0.57
USP28-209ENST00000540925 ANKRD60Q9BZ19 345 aa11.52□□□□□ -0.57
USP28-209ENST00000540925 UBE2J1Q9Y385 318 aaPredicted RBP11.52□□□□□ -0.57
USP28-209ENST00000540925 TRAV24A0A0B4J272 114 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 A0A1B0GUS0 222 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 ERICH4A6NGS2 130 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 VGLL3A8MV65 326 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 PIN1P1O15428 100 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 MAGEB3O15480 346 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 OMGP23515 440 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 COX7A1P24310 79 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 BDKRB2P30411 391 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 OR3A4PP47883 348 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 RIPK1Q13546 671 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 IL13RA2Q14627 380 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 DDI2Q5TDH0 399 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 GDPGP1Q6ZNW5 385 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 DYNAPQ8N1N2 210 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 DERL3Q96Q80 235 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 OR14A2Q96R54 314 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 SLITRK2Q9H156 845 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 PPA2Q9H2U2 334 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 DUSP21Q9H596 190 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 IFT22Q9H7X7 185 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 PCDHGB5Q9Y5G0 923 aa11.51□□□□□ -0.57
USP28-209ENST00000540925 VWFP04275 2813 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 ODAMA1E959 279 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 MYL12BO14950 172 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 MMP23AO75900 390 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 CLPXO76031 633 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 PAHP00439 452 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 CGB3P0DN86 165 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 CGB7P0DN87 165 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 CELP19835 753 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 PAX6P26367 422 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 ZNF93P35789 620 aaPredicted RBP11.5□□□□□ -0.57
USP28-209ENST00000540925 GLIPR1P48060 266 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 PPP3R1P63098 170 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 AESQ08117 197 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 PIGYQ3MUY2 71 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 SHISA2Q6UWI4 295 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 LHFPL4Q7Z7J7 247 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 SATL1Q86VE3 508 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 OR13D1Q8NGV5 346 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 OR4F5Q8NH21 305 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 WFDC12Q8WWY7 111 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 GPER1Q99527 375 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 NCOR1P1Q9H4R4 102 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 ZNF581Q9P0T4 197 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 FOXJ3Q9UPW0 622 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 ERGIC3Q9Y282 383 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 TBL2Q9Y4P3 447 aaKnown RBP11.5□□□□□ -0.57
USP28-209ENST00000540925 SESN1Q9Y6P5 492 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 MEGF8Q7Z7M0 2845 aa11.5□□□□□ -0.57
USP28-209ENST00000540925 DEGS1O15121 323 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 TSPAN9O75954 239 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 CDRT1O95170 752 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 ZNF44P15621 663 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 GP2P55259 537 aaKnown RBP11.49□□□□□ -0.57
USP28-209ENST00000540925 RSU1Q15404 277 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 LRRC75BQ2VPJ9 315 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 UNQ9370/PRO34162Q6UXP9 181 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 HEPN1Q6WQI6 88 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 Q6ZSV7 163 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 CDH26Q8IXH8 852 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 OR10K1Q8NGX5 313 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 LINC01006Q8NI28 216 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 OR5M11Q96RB7 305 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 ZNF184Q99676 751 aaPredicted RBP11.49□□□□□ -0.57
USP28-209ENST00000540925 SSX3Q99909 188 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 MND1Q9BWT6 205 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 PPIL3Q9H2H8 161 aaKnown RBP11.49□□□□□ -0.57
USP28-209ENST00000540925 TMEM133Q9H2Q1 129 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 C16orf95Q9H693 158 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 LINC00574Q9H8X3 128 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 TAS2R3Q9NYW6 316 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 MGAM2Q2M2H8 2515 aa11.49□□□□□ -0.57
USP28-209ENST00000540925 IGHV2-26A0A0B4J1V2 119 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 PNMA8CA0A1B0GUJ8 204 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 CLPSL1A2RUU4 121 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 FUOMA2VDF0 154 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 PTGES3LE9PB15 166 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 H3BUX3 64 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 SC5DO75845 299 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 CRYBA1P05813 215 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 CD34P28906 385 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 TGFBR2P37173 567 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 GDNFP39905 211 aa11.48□□□□□ -0.57
USP28-209ENST00000540925 RBM11P57052 281 aaKnown RBP11.48□□□□□ -0.57
USP28-209ENST00000540925 SCN1BQ07699 218 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms