RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TMEM207Q6UWW9 146 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 NFAM1Q8NET5 270 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 MYOGP15173 224 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 PCBP3P57721 371 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF117Q03924 483 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 TEPPQ6URK8 271 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF502Q8TBZ5 544 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 LSM10Q969L4 123 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 HSD17B10Q99714 261 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 A0A0B4J2E0 115 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 A0A1B0GX12 115 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 TRDCB7Z8K6 153 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 PRRX1P54821 245 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 SELENOTP62341 195 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 HYAL1Q12794 435 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 PYCR3Q53H96 274 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 SPNS3Q6ZMD2 512 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 LINC00596Q86U02 117 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 TBC1D26Q86UD7 250 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 PRELID3AQ96N28 172 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 WDR13Q9H1Z4 485 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 CBLN4Q9NTU7 201 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF324O75467 553 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF77Q15935 545 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 WDR25Q64LD2 544 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 TCF24Q7RTU0 167 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 C5orf30Q96GV9 206 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 ASB1Q9Y576 335 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 CROCCQ5TZA2 2017 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 hADV38S2A0JD32 116 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 IGF2P01344 180 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 IQCF3P0C7M6 154 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 KIR3DL2P43630 455 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 RBPMS2Q6ZRY4 209 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 TP53I13Q8NBR0 393 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 NUP37Q8NFH4 326 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 NDUFAF3Q9BU61 184 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 PROCRQ9UNN8 238 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 A0A1B0GWB2 263 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 UPK1AO00322 258 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 TNFSF11O14788 317 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 VENTXO95231 258 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 LGALS3P17931 250 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 GUCA2BQ16661 112 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 C10orf113Q5VZT2 155 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 PQLC2Q6ZP29 291 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 NPEPL1Q8NDH3 523 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 MISP3Q96FF7 219 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 MAP1LC3AQ9H492 121 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 IL23AQ9NPF7 189 aa9.96□□□□□ -0.81
LIMCH1-217ENST00000512946 COL2A1P02458 1487 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 ARSAP15289 507 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 ARF6P62330 175 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 Q8WTZ3 238 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 SHISA4Q96DD7 197 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF764Q96H86 408 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 HHIPQ96QV1 700 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 C17orf51A8MQB3 221 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 RHOVQ96L33 236 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 SPANXDQ9BXN6 97 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF430Q9H8G1 570 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 GSN-AS1Q9NRJ2 163 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 ADAMTS5Q9UNA0 930 aa9.96□□□□□ -0.82
LIMCH1-217ENST00000512946 KIRREL2Q6UWL6 708 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 ORAI1Q96D31 301 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 MRGPRX1Q96LB2 322 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 RHNO1Q9BSD3 238 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 DERL1Q9BUN8 251 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 GHITMQ9H3K2 345 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 MMP25Q9NPA2 562 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 CISD1Q9NZ45 108 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 LINC00869P0C866 280 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 GLIPR1P48060 266 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 LRRC75BQ2VPJ9 315 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 C19orf54Q5BKX5 351 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 CYB561D1Q8N8Q1 229 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 WNT16Q9UBV4 365 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 LOC390937A0A1W2PQ73 354 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 GCM2O75603 506 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 CA7P43166 264 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 FMODQ06828 376 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 HERPUD1Q15011 391 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 ANKRD34AQ69YU3 496 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 MOB3BQ86TA1 216 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 ZADH2Q8N4Q0 377 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 NT5CQ8TCD5 201 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 R3HDM4Q96D70 268 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 FOXB1Q99853 325 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 ANAPC13Q9BS18 74 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 C19orf24Q9BVV8 132 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 MRPL18Q9H0U6 180 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 AKIRIN1Q9H9L7 192 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 TMEM250H0YL14 139 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 MAS1LP35410 378 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 HIST1H2BAQ96A08 127 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 TUBA4BQ9H853 241 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 HSF4Q9ULV5 492 aa9.95□□□□□ -0.82
LIMCH1-217ENST00000512946 MYH3P11055 1940 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 OR11H12B2RN74 326 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 B3GALT4O96024 378 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms