RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 GPR173Q9NS66 373 aa11.05□□□□□ -0.64
CLK3-201ENST00000345005 CFAP47Q6ZTR5 3102 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 DMXL2Q8TDJ6 3036 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 ZNF816-ZNF321PA0A0X1KG74 233 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 RNASEK-C17orf49H0YIS7 233 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 ST8SIA5O15466 376 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 CSTBP04080 98 aaKnown RBP11.04□□□□□ -0.64
CLK3-201ENST00000345005 GAPDHP04406 335 aaKnown RBP11.04□□□□□ -0.64
CLK3-201ENST00000345005 CCL2P13500 99 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 ADCYAP1P18509 176 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 F2RL1P55085 397 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 VWA1Q6PCB0 445 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 TMEM88Q6PEY1 159 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 PEG10Q86TG7 708 aaKnown RBP11.04□□□□□ -0.64
CLK3-201ENST00000345005 TMEM200AQ86VY9 491 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 STX12Q86Y82 276 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 C1orf162Q8NEQ5 155 aaPredicted RBP11.04□□□□□ -0.64
CLK3-201ENST00000345005 EXTL1Q92935 676 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 MRGPRFQ96AM1 343 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 C1orf147Q96MC9 270 aaPredicted RBP11.04□□□□□ -0.64
CLK3-201ENST00000345005 S100A13Q99584 98 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 REPIN1Q9BWE0 567 aaKnown RBP11.04□□□□□ -0.64
CLK3-201ENST00000345005 EGLN1Q9GZT9 426 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 TUBA4BQ9H853 241 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.04□□□□□ -0.644e-6■■■□□ 18.6
CLK3-201ENST00000345005 PARP11Q9NR21 331 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 PPP1R14DQ9NXH3 145 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 KPTNQ9Y664 436 aa11.04□□□□□ -0.64
CLK3-201ENST00000345005 MGAQ8IWI9 3026 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 KMT2BQ9UMN6 2715 aaPredicted RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 USP24Q9UPU5 2620 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 C1orf196B1AJZ1 125 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 UBE2CO00762 179 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 CA11O75493 328 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 RAD51DO75771 328 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 JTBO76095 146 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 CST4P01036 141 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 COX5AP20674 150 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 SULT1A2P50226 295 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 DVL1P1P54792 670 aaPredicted RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 MTCP1P56278 107 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 FOXF2Q12947 444 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 GABRA6Q16445 453 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 C1orf185Q5T7R7 199 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 ZNF324BQ6AW86 544 aaPredicted RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 LHFPL2Q6ZUX7 228 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 MRPL21Q7Z2W9 205 aaKnown RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 ADAD2Q8NCV1 583 aaKnown RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 OR5L1Q8NGL2 311 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 OR5H2Q8NGV7 314 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 MARCH1Q8TCQ1 289 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 TMED6Q8WW62 240 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 EMG1Q92979 244 aaKnown RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 PIGTQ969N2 578 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 RAB3CQ96E17 227 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 GAL3ST1Q99999 423 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 SELENOIQ9C0D9 397 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 LUZP4Q9P127 313 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 PROCRQ9UNN8 238 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 SLC7A11Q9UPY5 501 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 MAP1BP46821 2468 aaKnown RBP11.03□□□□□ -0.64
CLK3-201ENST00000345005 PTPRQQ9UMZ3 2332 aa11.03□□□□□ -0.64
CLK3-201ENST00000345005 TRAV20A0A0B4J274 112 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 CDC14BO60729 498 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 TNFSF13O75888 250 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 LYZL6O75951 148 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 MPIG6BO95866 241 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 CRYBA1P05813 215 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 CD5P06127 495 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 ACAA1P09110 424 aaPredicted RBP11.02□□□□□ -0.64
CLK3-201ENST00000345005 PMELP40967 661 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 RBP2P50120 134 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 MRPL49Q13405 166 aaKnown RBP11.02□□□□□ -0.64
CLK3-201ENST00000345005 SMCO1Q147U7 214 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 TBC1D28Q2M2D7 210 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 DMRTC1Q5HYR2 192 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 CRIP3Q6Q6R5 217 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 ZGRF1Q86YA3 2104 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 ZNF561Q8N587 486 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 ZSCAN4Q8NAM6 433 aaPredicted RBP11.02□□□□□ -0.64
CLK3-201ENST00000345005 OR4A4PQ8NGN8 299 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 STARD4Q96DR4 205 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 TMEM59Q9BXS4 323 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 METTL8Q9H825 291 aaKnown RBP11.02□□□□□ -0.64
CLK3-201ENST00000345005 STARD10Q9Y365 291 aa11.02□□□□□ -0.64
CLK3-201ENST00000345005 ZNF729A6NN14 1252 aaPredicted RBP11.02□□□□□ -0.65
CLK3-201ENST00000345005 J3QW42 95 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 FBXO24O75426 580 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 CRTAPO75718 401 aaPredicted RBP11.02□□□□□ -0.65
CLK3-201ENST00000345005 EIF3GO75821 320 aaKnown RBP eCLIP11.02□□□□□ -0.65
CLK3-201ENST00000345005 PMP2P02689 132 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 FBP1P09467 338 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 HIST1H1DP16402 221 aaKnown RBP11.02□□□□□ -0.65
CLK3-201ENST00000345005 ZNF14P17017 642 aaPredicted RBP11.02□□□□□ -0.65
CLK3-201ENST00000345005 PTAFRP25105 342 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 HOXC12P31275 282 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 TIMP3P35625 211 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 FUT6P51993 359 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 P2RY6Q15077 328 aa11.02□□□□□ -0.65
CLK3-201ENST00000345005 SLC22A6Q4U2R8 563 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms