RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BRICD5Q6PL45 260 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 OR8H2Q8N162 312 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 BPIFB2Q8N4F0 458 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 SUMF2Q8NBJ7 301 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 OR4S1Q8NGB4 309 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 ACOT12Q8WYK0 555 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 C1orf159Q96HA4 380 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 DCUN1D5Q9BTE7 237 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 SPACA1Q9HBV2 294 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 CCDC59Q9P031 241 aaKnown RBP18.39■□□□□ 0.53
SDC3-202ENST00000339394 RCC2Q9P258 522 aaKnown RBP18.39■□□□□ 0.53
SDC3-202ENST00000339394 COMMD3Q9UBI1 195 aa18.39■□□□□ 0.53
SDC3-202ENST00000339394 FLNAP21333 2647 aaKnown RBP18.39■□□□□ 0.53
SDC3-202ENST00000339394 SOCS1O15524 211 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 FUT3P21217 361 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 OR3A1P47881 315 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 GRK1Q15835 563 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 PAN3Q58A45 887 aaKnown RBP18.38■□□□□ 0.53
SDC3-202ENST00000339394 DPCDQ9BVM2 203 aaPredicted RBP18.38■□□□□ 0.53
SDC3-202ENST00000339394 PPA2Q9H2U2 334 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 BATF3Q9NR55 127 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 RHBDL2Q9NX52 303 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 PEX16Q9Y5Y5 336 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 MED13LQ71F56 2210 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 ZANQ9Y493 2812 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 METTL21EPA6NDL7 271 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 KIAA1324LA8MWY0 1029 aaPredicted RBP18.38■□□□□ 0.53
SDC3-202ENST00000339394 GPR37O15354 613 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 BLVRBP30043 206 aaPredicted RBP18.38■□□□□ 0.53
SDC3-202ENST00000339394 LCN2P80188 198 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 DYNC1I2Q13409 638 aaKnown RBP18.38■□□□□ 0.53
SDC3-202ENST00000339394 FAM189A2Q15884 450 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 RAB12Q6IQ22 244 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 OR56B1Q8NGI3 324 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 OR5D13Q8NGL4 314 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 PPP1R35Q8TAP8 253 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 SLC25A38Q96DW6 304 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 SLIRPQ9GZT3 109 aaKnown RBP18.38■□□□□ 0.53
SDC3-202ENST00000339394 ATG5Q9H1Y0 275 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 LPAR2Q9HBW0 351 aa18.38■□□□□ 0.53
SDC3-202ENST00000339394 FOXI3A8MTJ6 420 aaPredicted RBP18.37■□□□□ 0.53
SDC3-202ENST00000339394 A8MXK9 166 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 H3BUI4 141 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 PDCD6O75340 191 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 FOXH1O75593 365 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 IGHV4-31P0DP07 118 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 TMEM50BP56557 158 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 MOGAT2Q3SYC2 334 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 NKAPLQ5M9Q1 402 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 BTN2A1Q7KYR7 527 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 SAMD12Q8N8I0 201 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 CYYR1Q96J86 154 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 NEDD4LQ96PU5 975 aa18.37■□□□□ 0.53
SDC3-202ENST00000339394 B4DSR2 109 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 RAB27BO00194 218 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 MGST3O14880 152 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 CSN2P05814 226 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 CHATP28329 748 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 GDPD3Q7L5L3 318 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 C6orf201Q7Z4U5 140 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 MSI2Q96DH6 328 aaKnown RBP18.36■□□□□ 0.53
SDC3-202ENST00000339394 C18orf12Q96KH6 178 aa18.36■□□□□ 0.53
SDC3-202ENST00000339394 LOC105371242A0A075B767 164 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 C22orf46C9J442 243 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 MCRIP1C9JLW8 97 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 ATXN7L3Q14CW9 347 aaPredicted RBP18.35■□□□□ 0.53
SDC3-202ENST00000339394 PLAC9Q5JTB6 97 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 MZT2AQ6P582 158 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 RTN4RL2Q86UN3 420 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 LINC01356Q8N9X3 169 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 H1FXQ92522 213 aaKnown RBP18.35■□□□□ 0.53
SDC3-202ENST00000339394 ABCG5Q9H222 651 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 PLEKHJ1Q9NW61 149 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 POLR3KQ9Y2Y1 108 aaPredicted RBP18.35■□□□□ 0.53
SDC3-202ENST00000339394 MALRD1Q5VYJ5 2156 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 MAST4O15021 2626 aa18.35■□□□□ 0.53
SDC3-202ENST00000339394 MSMBP08118 114 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 GZMKP49863 264 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 AESQ08117 197 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 EDDM3AQ14507 147 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 UBE2NLQ5JXB2 153 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 CD276Q5ZPR3 534 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 Q6ZTK2 550 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 CMTM4Q8IZR5 234 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 TPRX1Q8N7U7 411 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 OR4M1Q8NGD0 313 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 OR10R2Q8NGX6 335 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 ARHGAP5-AS1Q96IT6 56 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 DCTN5Q9BTE1 182 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 TMUB1Q9BVT8 246 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 ING3Q9NXR8 418 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 ECDO95905 644 aaPredicted RBP18.34■□□□□ 0.53
SDC3-202ENST00000339394 GLAP06280 429 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 KCNJ3P48549 501 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 EDDM3BP56851 147 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 RBM39Q14498 530 aaKnown RBP18.34■□□□□ 0.53
SDC3-202ENST00000339394 C11orf91Q3C1V1 193 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 NEK7Q8TDX7 302 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 COQ2Q96H96 371 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 SULT4A1Q9BR01 284 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms