RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ZNF581Q9P0T4 197 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 TEX15Q9BXT5 2789 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 TMEM272A0A1B0GTI8 110 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 TMEM14DPA8MWL7 114 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 PAHP00439 452 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 PLA2G7Q13093 441 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 IL13RA2Q14627 380 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 WDR25Q64LD2 544 aaPredicted RBP11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF841Q6ZN19 808 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 OR2W3Q7Z3T1 314 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 SLC25A46Q96AG3 418 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 TMEM82A0PJX8 343 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 PSPNO60542 156 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 INHBBP09529 407 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 IGHV4-31P0DP07 118 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 ZFP36P26651 326 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 CFPP27918 469 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 RPS27AP62979 156 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 QRFPP83859 136 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 EDDM3AQ14507 147 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 GRK1Q15835 563 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 NHLRC3Q5JS37 347 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 NKAPLQ5M9Q1 402 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 Q6P435 159 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 CROCCP3Q8IVE0 287 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 LGALS14Q8TCE9 139 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 Q96M66 194 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 BCL7BQ9BQE9 202 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 NICN1Q9BSH3 213 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 URM1Q9BTM9 101 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 PPA2Q9H2U2 334 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 OR5V1Q9UGF6 321 aa11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 RSL24D1Q9UHA3 163 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-208ENST00000556412 TANC2Q9HCD6 1990 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 B4DSR2 109 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 SLC33A1O00400 549 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 FOXH1O75593 365 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 TGFAP01135 160 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 TK1P04183 234 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF16P17020 682 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 CPT2P23786 658 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 GZMKP49863 264 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 NPY4RP50391 375 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 RORCP51449 518 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 EFNB2P52799 333 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 MPV17LQ2QL34 196 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 PAN3Q58A45 887 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 BRICD5Q6PL45 260 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 LINC00596Q86U02 117 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 BPIFB2Q8N4F0 458 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 LINC01356Q8N9X3 169 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 CHST4Q8NCG5 386 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 NEK7Q8TDX7 302 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 MSI2Q96DH6 328 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 BARHL1Q9BZE3 327 aa11.66□□□□□ -0.54
VIPAS39-208ENST00000556412 DPPA5A6NC42 116 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF737O75373 536 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 FCN3O75636 299 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 MSMBP08118 114 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 EDDM3BP56851 147 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 ATXN7L3Q14CW9 347 aaPredicted RBP11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 CYB5R2Q6BCY4 276 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 C17orf107Q6ZR85 190 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 BTN2A1Q7KYR7 527 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 GDPD3Q7L5L3 318 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 OR4S1Q8NGB4 309 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 OR4M1Q8NGD0 313 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 PPP1R35Q8TAP8 253 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 SNX22Q96L94 193 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 RBM38Q9H0Z9 239 aaKnown RBP11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 LPAR5Q9H1C0 372 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 RAB22AQ9UL26 194 aa11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 CHD3Q12873 2000 aaKnown RBP11.65□□□□□ -0.54
VIPAS39-208ENST00000556412 LOC105371242A0A075B767 164 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 TRAV24A0A0B4J272 114 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 SMIM31A0A1B0GVY4 71 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 KIAA1324LA8MWY0 1029 aaPredicted RBP11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 K7N7A8 449 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 LDLRAD4O15165 306 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 SOX6P35712 828 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 OR3A1P47881 315 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 VEGFCP49767 419 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 RAB12Q6IQ22 244 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 OR8H2Q8N162 312 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 SUMF2Q8NBJ7 301 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 OR5H6Q8NGV6 325 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 SMR3AQ99954 134 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 DPCDQ9BVM2 203 aaPredicted RBP11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 TMUB1Q9BVT8 246 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 FAM234AQ9H0X4 552 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 ATG5Q9H1Y0 275 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 PEX16Q9Y5Y5 336 aa11.65□□□□□ -0.55
VIPAS39-208ENST00000556412 MAP1AP78559 2803 aaPredicted RBP11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 MEX3AA1L020 520 aaKnown RBP11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 BLVRBP30043 206 aaPredicted RBP11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 CD276Q5ZPR3 534 aa11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 FAM185AQ8N0U4 392 aa11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 TPRX1Q8N7U7 411 aa11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 OR5D13Q8NGL4 314 aa11.64□□□□□ -0.55
VIPAS39-208ENST00000556412 NEDD4LQ96PU5 975 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms