RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RAB13P51153 203 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 SCN1BQ07699 218 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 RAB40BQ12829 278 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 SSX2Q16385 188 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 LDLRAD2Q5SZI1 272 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 OR11H6Q8NGC7 330 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 OR5AK2Q8NH90 309 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 PIFOQ8TCI5 191 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 TSEN15Q8WW01 171 aaKnown RBP12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 APH1BQ8WW43 257 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 PDCD1LG2Q9BQ51 273 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF649Q9BS31 505 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 COMMD4Q9H0A8 199 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 ABCB10Q9NRK6 738 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 INPP5EQ9NRR6 644 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 PCDHGB5Q9Y5G0 923 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 SESN1Q9Y6P5 492 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 TMEM212A6NML5 194 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 SH2D1BO14796 132 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 KDM4BO94953 1096 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 ZFPL1O95159 310 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 OR2H2O95918 312 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 CCDC159P0C7I6 412 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 ZNF44P15621 663 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 KIR2DS4P43632 304 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 EFNB2P52799 333 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 GBX2P52951 348 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 P2RX3P56373 397 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 LPCAT4Q643R3 524 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 HIST2H2BDQ6DRA6 164 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 LIAT1Q6ZQX7 453 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 TMEM219Q86XT9 240 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 ZNF555Q8NEP9 628 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 OR2T6Q8NHC8 308 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 FAM110DQ8TAY7 271 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 MALSU1Q96EH3 234 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 NPFFR1Q9GZQ6 430 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 RANBP3Q9H6Z4 567 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 FOXJ3Q9UPW0 622 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 DHDHQ9UQ10 334 aa12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 RPL36Q9Y3U8 105 aaKnown RBP12.7□□□□□ -0.38
CCDC88B-205ENST00000472524 IGHV2-26A0A0B4J1V2 119 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 SULT1B1O43704 296 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 MMP23AO75900 390 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 TMEM225BP0DP42 221 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 JUNBP17275 347 aaPredicted RBP12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 MRPL28Q13084 256 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 IL18R1Q13478 541 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 SMN1Q16637 294 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 C2orf68Q2NKX9 166 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 KLHL22Q53GT1 634 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 Q6ZTK2 550 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 SERPINA12Q8IW75 414 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 KLHDC1Q8N7A1 406 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 C11orf44Q8N8P7 122 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 OR5D14Q8NGL3 314 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 NDNFQ8TB73 568 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 RPS4Y2Q8TD47 263 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 TMEM133Q9H2Q1 129 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 ING3Q9NXR8 418 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 TCF19Q9Y242 345 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 UBE2J1Q9Y385 318 aaPredicted RBP12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 HILPDAQ9Y5L2 63 aa12.69□□□□□ -0.38
CCDC88B-205ENST00000472524 PLXNB1O43157 2135 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 TRGV10A0A0A0MS01 117 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 MEGF11A6BM72 1044 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 VGLL3A8MV65 326 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 ERP29P30040 261 aaKnown RBP12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 SOX2P48431 317 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 GTF2A1P52655 376 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 ZP1P60852 638 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 AESQ08117 197 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 HERPUD1Q15011 391 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 KISS1Q15726 138 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 ZSCAN26Q16670 478 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 PRAMEF5Q5TYX0 476 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 CCBE1Q6UXH8 406 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 BAIAP2L2Q6UXY1 529 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 SAXO1Q8IYX7 474 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 PARP16Q8N5Y8 322 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 STMN2Q93045 179 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 CLEC7AQ9BXN2 247 aa12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 MRPS18AQ9NVS2 196 aaKnown RBP12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 SMPD3Q9NY59 655 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-205ENST00000472524 FUOMA2VDF0 154 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 FAM172BPA6NC97 362 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 A6NDX4 124 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 F2RL2O00254 374 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 WBP4O75554 376 aaKnown RBP12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 RPSAP08865 295 aaKnown RBP12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 CSF1P09603 554 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 LIMS3P0CW19 117 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 LIMS4P0CW20 117 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 VSIG10L2P0DP72 767 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 GLIPR1P48060 266 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 SLC34A1Q06495 639 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 HABP2Q14520 560 aaPredicted RBP12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 ATXN7L3Q14CW9 347 aaPredicted RBP12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 MINOS1Q5TGZ0 78 aa12.67□□□□□ -0.38
CCDC88B-205ENST00000472524 ZNF691Q5VV52 312 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms