RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 IGHV2-70DA0A0C4DH43 119 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 MAGEA13PA6NCF6 341 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 SFTPBP07988 381 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 CHRM2P08172 466 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 SELLP14151 372 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 NDUFB7P17568 137 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 SRMP19623 302 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 BMXP51813 675 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 SNU13P55769 128 aaKnown RBP14.63□□□□□ -0.07
COL7A1-205ENST00000465238 FABP5Q01469 135 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 NEDD8Q15843 81 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 DGUOKQ16854 277 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 SHISA2Q6UWI4 295 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 C9orf139Q6ZV77 190 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 BTN2A1Q7KYR7 527 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 NKAIN3Q8N8D7 197 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 ZNRF1Q8ND25 227 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 SLC25A28Q96A46 364 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 UPRTQ96BW1 309 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 C1orf147Q96MC9 270 aaPredicted RBP14.63□□□□□ -0.07
COL7A1-205ENST00000465238 ZNF48Q96MX3 618 aaPredicted RBP14.63□□□□□ -0.07
COL7A1-205ENST00000465238 DUX5Q96PT3 197 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 NKX3-1Q99801 234 aaPredicted RBP14.63□□□□□ -0.07
COL7A1-205ENST00000465238 METTL9Q9H1A3 318 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 VCX3AQ9NNX9 186 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 GSTK1Q9Y2Q3 226 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 MAB21L2Q9Y586 359 aa14.63□□□□□ -0.07
COL7A1-205ENST00000465238 KIR2DS1A0A191URI9 304 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 CLDN34H7C241 214 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 SH2D1BO14796 132 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 ENSAO43768 121 aaKnown RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 CDRT1O95170 752 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 RNASE1P07998 156 aaKnown RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 MTNR1BP49286 362 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 GP2P55259 537 aaKnown RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 COL10A1Q03692 680 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 SPIN3Q5JUX0 258 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 ASCL4Q6XD76 172 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 FGFRL1Q8N441 504 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 H1FXQ92522 213 aaKnown RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 MUL1Q969V5 352 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 DACT3Q96B18 629 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 FOXRED1Q96CU9 486 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 PPIL3Q9H2H8 161 aaKnown RBP14.62□□□□□ -0.07
COL7A1-205ENST00000465238 ZNF696Q9H7X3 374 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 PCDHB16Q9NRJ7 776 aa14.62□□□□□ -0.07
COL7A1-205ENST00000465238 C22orf46C9J442 243 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 FCN3O75636 299 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 HTR3BO95264 441 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 HAND1O96004 215 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 CSTBP04080 98 aaKnown RBP14.61□□□□□ -0.07
COL7A1-205ENST00000465238 LIPFP07098 398 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 IGHV4-38-2P0DP08 117 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 DUSP1P28562 367 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 CAV3P56539 151 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 ZNF146Q15072 292 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 SYT6Q5T7P8 510 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-205ENST00000465238 GLT8D1Q68CQ7 371 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 ELP2Q6IA86 826 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 LRRTM1Q86UE6 522 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 ASCC1Q8N9N2 400 aaKnown RBP14.61□□□□□ -0.07
COL7A1-205ENST00000465238 SEBOXQ9HB31 216 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-205ENST00000465238 IL36RNQ9UBH0 155 aa14.61□□□□□ -0.07
COL7A1-205ENST00000465238 MRPS28Q9Y2Q9 187 aaKnown RBP14.61□□□□□ -0.07
COL7A1-205ENST00000465238 TRDV1A0A1B0GX56 115 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 ZNF780AO75290 641 aaPredicted RBP14.6□□□□□ -0.07
COL7A1-205ENST00000465238 GALP22466 123 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 CALRP27797 417 aaKnown RBP14.6□□□□□ -0.07
COL7A1-205ENST00000465238 FGF12P61328 243 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 SCN1BQ07699 218 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 GPR176Q14439 515 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 PRR31Q5SQ13 230 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 OR10K1Q8NGX5 313 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 NR1H4Q96RI1 486 aaPredicted RBP14.6□□□□□ -0.07
COL7A1-205ENST00000465238 UQCC2Q9BRT2 126 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 DCTN5Q9BTE1 182 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 FAM234AQ9H0X4 552 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 CNTD2Q9H8S5 307 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 EXOSC4Q9NPD3 245 aaKnown RBP14.6□□□□□ -0.07
COL7A1-205ENST00000465238 IL36GQ9NZH8 169 aa14.6□□□□□ -0.07
COL7A1-205ENST00000465238 RPUSD1Q9UJJ7 312 aaKnown RBP14.6□□□□□ -0.07
COL7A1-205ENST00000465238 IGHV3OR16-10A0A075B7F0 116 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 TRAV40A0A0B4J280 105 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 TK1P04183 234 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 SLC9A3R2Q15599 337 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 AWAT2Q6E213 333 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 CD200R1LQ6Q8B3 271 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 GLIPR1L1Q6UWM5 242 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 OR5D13Q8NGL4 314 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 PPP1R35Q8TAP8 253 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 SNX22Q96L94 193 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 TRRAPQ9Y4A5 3859 aa14.59□□□□□ -0.07
COL7A1-205ENST00000465238 POM121CA8CG34 1229 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 K7N7A8 449 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 SIRPB1O00241 398 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 DEGS1O15121 323 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 ZNF44P15621 663 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 SERPINA2P20848 420 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 GABRR1P24046 479 aa14.58□□□□□ -0.08
COL7A1-205ENST00000465238 SLC22A6Q4U2R8 563 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms