RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 C3orf80F5H4A9 247 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 DHHO43323 396 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 IGHV3-9P01782 118 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 MBP02144 154 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 ZNF728P0DKX0 622 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 FOLR2P14207 255 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 THBS4P35443 961 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 CAMLGP49069 296 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 SLC35A1P78382 337 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 SLC25A53Q5H9E4 307 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 KDF1Q8NAX2 398 aaPredicted RBP8.73□□□□□ -1.01
LIG3-201ENST00000262327 RHBDD1Q8TEB9 315 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 HIST1H2BAQ96A08 127 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 NABP1Q96AH0 204 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 ALKBH3Q96Q83 286 aaPredicted RBP8.73□□□□□ -1.01
LIG3-201ENST00000262327 TMPRSS5Q9H3S3 457 aa8.73□□□□□ -1.01
LIG3-201ENST00000262327 IGLV3-12A0A075B6K2 115 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 CCDC187A0A096LP49 1063 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 FAM157AC9JC47 383 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 B4GALT1P15291 398 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 NTF4P34130 210 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 DVL1P1P54792 670 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 PPA1Q15181 289 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 Q96M66 194 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 ABHD14AQ9BUJ0 271 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 RGCCQ9H4X1 137 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 SMCO4Q9NRQ5 59 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 ZDHHC8Q9ULC8 765 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 WASF3Q9UPY6 502 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 IGKV1-12A0A0C4DH73 117 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 A0A1W2PPE2 198 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 C7orf77A4D0Y5 90 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 ETV2O00321 342 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 ATXN7O15265 892 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 JTBO76095 146 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 IGKV1D-12P01611 117 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 HEXAP06865 529 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 PPP1CCP36873 323 aaKnown RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 ZFP36L1Q07352 338 aaKnown RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 GUK1Q16774 197 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 ZNF468Q5VIY5 522 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 ADAM5Q6NVV9 412 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 TMEM182Q6ZP80 229 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 FBXL14Q8N1E6 418 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 FAM24BQ8N5W8 94 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 RNF122Q9H9V4 155 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 P4HTMQ9NXG6 502 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 V9GYS6 101 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 A0A0J9YW62 118 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 NUDT19A8MXV4 375 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 HSPB6O14558 160 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 TAAR5O14804 337 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 PHF1O43189 567 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 ONECUT2O95948 504 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 CTSDP07339 412 aaPredicted RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 RAB4BP61018 213 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 EIF5AP63241 154 aaKnown RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 PYY3Q5JQD4 70 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 YRDCQ86U90 279 aaKnown RBP8.72□□□□□ -1.01
LIG3-201ENST00000262327 S100PBPQ96BU1 408 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 SRXN1Q9BYN0 137 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 MAGT1Q9H0U3 335 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 PARP11Q9NR21 331 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 HDGFL3Q9Y3E1 203 aa8.72□□□□□ -1.01
LIG3-201ENST00000262327 ADAMTS20P59510 1910 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 PPIHO43447 177 aaKnown RBP8.71□□□□□ -1.01
LIG3-201ENST00000262327 CD59P13987 128 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 KCNMB1Q16558 191 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 NCMAPQ5T1S8 102 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 FBXW12Q6X9E4 464 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 OR10AD1Q8NGE0 317 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 FGFBP3Q8TAT2 258 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 FAM213BQ8TBF2 198 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 RARRES2Q99969 163 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 TM2D1Q9BX74 207 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 TOLLIPQ9H0E2 274 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 METTL9Q9H1A3 318 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 CRLF2Q9HC73 371 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 KCNIP3Q9Y2W7 256 aa8.71□□□□□ -1.01
LIG3-201ENST00000262327 CDRT15L2A8MXV6 281 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 CDX4O14627 284 aaPredicted RBP8.71□□□□□ -1.02
LIG3-201ENST00000262327 IGHV2-5P01817 119 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 FGF5P12034 268 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 ZNF14P17017 642 aaPredicted RBP8.71□□□□□ -1.02
LIG3-201ENST00000262327 IL11RAQ14626 422 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 TMEM187Q14656 261 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 C9orf135Q5VTT2 229 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 ZIC4Q8N9L1 334 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 RNF138Q8WVD3 245 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 PP6455Q8WZ26 134 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 PIGCQ92535 297 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 BORCS8Q96FH0 119 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 RIMS4Q9H426 269 aaPredicted RBP8.71□□□□□ -1.02
LIG3-201ENST00000262327 NAA60Q9H7X0 242 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 SLC2A9Q9NRM0 540 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 DKKL1Q9UK85 242 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 PUS1Q9Y606 427 aaKnown RBP eCLIP8.71□□□□□ -1.02
LIG3-201ENST00000262327 NCOR1O75376 2440 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 FREM1Q5H8C1 2179 aa8.71□□□□□ -1.02
LIG3-201ENST00000262327 BDP1A6H8Y1 2624 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms