RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CHRM2P08172 466 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 TGFBR2P37173 567 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 DLX1P56177 255 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 PPP3R1P63098 170 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 PRB3Q04118 309 aaPredicted RBP12.53□□□□□ -0.4
LIG1-219ENST00000600055 METTL11BQ5VVY1 283 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 SAXO1Q8IYX7 474 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 ASCC1Q8N9N2 400 aaKnown RBP12.53□□□□□ -0.4
LIG1-219ENST00000600055 OR4M1Q8NGD0 313 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 TNFAIP8L1Q8WVP5 186 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 DERL3Q96Q80 235 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 GPER1Q99527 375 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 YTHDF1Q9BYJ9 559 aaKnown RBP12.53□□□□□ -0.4
LIG1-219ENST00000600055 TMEM138Q9NPI0 162 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 C19orf12Q9NSK7 152 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 GSTK1Q9Y2Q3 226 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 DOCK11Q5JSL3 2073 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 MXRA5Q9NR99 2828 aa12.52□□□□□ -0.4
LIG1-219ENST00000600055 A0A1W2PQ09 198 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 TMEM82A0PJX8 343 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 K7N7A8 449 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 TCF21O43680 179 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 ZNF737O75373 536 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 GPX5O75715 221 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 TK1P04183 234 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 ALDOBP05062 364 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 HSMCR30P0CW71 290 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 EEF1B2P24534 225 aaKnown RBP12.52□□□□□ -0.41
LIG1-219ENST00000600055 BDKRB2P30411 391 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 OR3A4PP47883 348 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 SCGB2A2Q13296 93 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 DDI2Q5TDH0 399 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 RUSC1-AS1Q66K80 236 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 BRD3OSQ6XYD6 125 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 VMO1Q7Z5L0 202 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 PDZD9Q8IXQ8 264 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 FAM185AQ8N0U4 392 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 BPIFB2Q8N4F0 458 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 Q8N7P7 452 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 ZSCAN4Q8NAM6 433 aaPredicted RBP12.52□□□□□ -0.41
LIG1-219ENST00000600055 OR10K1Q8NGX5 313 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 LHX4Q969G2 390 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 TMED9Q9BVK6 235 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 NOX4Q9NPH5 578 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 KPTNQ9Y664 436 aa12.52□□□□□ -0.41
LIG1-219ENST00000600055 FBN1P35555 2871 aaKnown RBP12.51□□□□□ -0.41
LIG1-219ENST00000600055 VENTXO95231 258 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 FSTP19883 344 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 ZNF146Q15072 292 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 PDCD1Q15116 288 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 FAM27D1Q5T7N8 215 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 LIPKQ5VXJ0 399 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 FIP1L1Q6UN15 594 aaKnown RBP12.51□□□□□ -0.41
LIG1-219ENST00000600055 UNQ9370/PRO34162Q6UXP9 181 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 C17orf107Q6ZR85 190 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 PXT1Q8NFP0 134 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 ZNF48Q96MX3 618 aaPredicted RBP12.51□□□□□ -0.41
LIG1-219ENST00000600055 FAM192AQ9GZU8 254 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 MS4A7Q9GZW8 240 aaPredicted RBP12.51□□□□□ -0.41
LIG1-219ENST00000600055 CHST6Q9GZX3 395 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 SIRT7Q9NRC8 400 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 CKLFQ9UBR5 152 aa12.51□□□□□ -0.41
LIG1-219ENST00000600055 TRBV23-1A0A0A0MS06 115 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 CENPVL3A0A0U1RRI6 287 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 MEX3AA1L020 520 aaKnown RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 SIRPB1O00241 398 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 PSPNO60542 156 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 CDRT1O95170 752 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 OR2H2O95918 312 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 MAS1P04201 325 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 GABRR1P24046 479 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 FPR2P25090 351 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 ZNF93P35789 620 aaPredicted RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 PTGFRP43088 359 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 GP2P55259 537 aaKnown RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 RPL31P62899 125 aaKnown RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 SCN1BQ07699 218 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 ACSM3Q53FZ2 586 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 SPIN3Q5JUX0 258 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 GPR157Q5UAW9 335 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 TMEM200BQ69YZ2 307 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 KIR3DL3Q8N743 410 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 SIGLECL1Q8N7X8 197 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 OR4S1Q8NGB4 309 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 ZNF418Q8TF45 676 aaPredicted RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 UFD1Q92890 307 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 TMEM203Q969S6 136 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 CPNE2Q96FN4 548 aaPredicted RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 SNX22Q96L94 193 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 FAM234AQ9H0X4 552 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 SEBOXQ9HB31 216 aaPredicted RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 EXOSC4Q9NPD3 245 aaKnown RBP12.5□□□□□ -0.41
LIG1-219ENST00000600055 ING4Q9UNL4 249 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 FOXJ3Q9UPW0 622 aa12.5□□□□□ -0.41
LIG1-219ENST00000600055 MDFIC2A0A1B0GVS7 189 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 SH2D1BO14796 132 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 EDDM3BP56851 147 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 ERVFRD-1P60508 538 aa12.49□□□□□ -0.41
LIG1-219ENST00000600055 RPS25P62851 125 aaKnown RBP12.49□□□□□ -0.41
LIG1-219ENST00000600055 KLRD1Q13241 179 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms