RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PRDX2P32119 198 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 RBP2P50120 134 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 ATP1B3P54709 279 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 ERVK11-1P61568 191 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 RPS25P62851 125 aaKnown RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 COL10A1Q03692 680 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 PAX8Q06710 450 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 KLRD1Q13241 179 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 BRD3OSQ6XYD6 125 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 UTS2BQ765I0 119 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 EGFL6Q8IUX8 553 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 KIR3DL3Q8N743 410 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 TPRX1Q8N7U7 411 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 GPR148Q8TDV2 347 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 PP6455Q8WZ26 134 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 MYDGFQ969H8 173 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 TMEM106AQ96A25 262 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 CEP19Q96LK0 163 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 NR1H4Q96RI1 486 aaPredicted RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 TBX15Q96SF7 602 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 ZNF184Q99676 751 aaPredicted RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 FAM192AQ9GZU8 254 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 CHST6Q9GZX3 395 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 PPIL3Q9H2H8 161 aaKnown RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 DUSP21Q9H596 190 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 C19orf12Q9NSK7 152 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 ONECUT1Q9UBC0 465 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 SLC25A10Q9UBX3 287 aaPredicted RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 ZNF69Q9UC07 566 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 RAB26Q9ULW5 256 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 ERGIC3Q9Y282 383 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 AUP1Q9Y679 476 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 TRAV40A0A0B4J280 105 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 TRBV5-5A0A0J9YX44 114 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 KIR2DS1A0A191URI9 304 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 A0A1W2PP11 408 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 NKX6-3A6NJ46 265 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 CLDN34H7C241 214 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 SIRPB1O00241 398 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 GABRPO00591 440 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 SULT1B1O43704 296 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 ACAA1P09110 424 aaPredicted RBP11.41□□□□□ -0.58
CLN3-235ENST00000568497 TMEM225BP0DP42 221 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 GP2P55259 537 aaKnown RBP11.41□□□□□ -0.58
CLN3-235ENST00000568497 ZP1P60852 638 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 SCN1BQ07699 218 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 IL24Q13007 206 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 PDZK1IP1Q13113 114 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 LIPKQ5VXJ0 399 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 SERPINA12Q8IW75 414 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 PARP16Q8N5Y8 322 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 DCTN5Q9BTE1 182 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 PKIBQ9C010 78 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 HES4Q9HCC6 221 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 NOX4Q9NPH5 578 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 SIRT7Q9NRC8 400 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 GSTK1Q9Y2Q3 226 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 TPRKBQ9Y3C4 175 aa11.41□□□□□ -0.58
CLN3-235ENST00000568497 HSPB6O14558 160 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 SIGLEC5O15389 551 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 MAS1P04201 325 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 VSIG8P0DPA2 414 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 PRKACBP22694 351 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 PAX6P26367 422 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 MED21Q13503 144 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 EDDM3AQ14507 147 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 SPHARQ15513 63 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 SLC9A3R2Q15599 337 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 KISS1Q15726 138 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 KCNJ8Q15842 424 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 SMIM21Q3B7S5 101 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 CCDC58Q4VC31 144 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 DDI2Q5TDH0 399 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 METTL11BQ5VVY1 283 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 LHFPL2Q6ZUX7 228 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 SLC36A1Q7Z2H8 476 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 FAM185AQ8N0U4 392 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 ASCC1Q8N9N2 400 aaKnown RBP11.4□□□□□ -0.58
CLN3-235ENST00000568497 TNFAIP8L1Q8WVP5 186 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 ITFG2Q969R8 447 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 ZNF48Q96MX3 618 aaPredicted RBP11.4□□□□□ -0.58
CLN3-235ENST00000568497 MND1Q9BWT6 205 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 CDCA4Q9BXL8 241 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 KCNK15Q9H427 330 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 RPUSD1Q9UJJ7 312 aaKnown RBP11.4□□□□□ -0.58
CLN3-235ENST00000568497 NUP50Q9UKX7 468 aa11.4□□□□□ -0.58
CLN3-235ENST00000568497 POLR3KQ9Y2Y1 108 aaPredicted RBP11.4□□□□□ -0.58
CLN3-235ENST00000568497 KIAA2026Q5HYC2 2103 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 TRBV5-7A0A0A0MS05 114 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 A0A1B0GUS0 222 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 ZNF879B4DU55 563 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 NOS1APO75052 506 aaPredicted RBP11.39□□□□□ -0.59
CLN3-235ENST00000568497 FSTL3O95633 263 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 PRB2P02812 416 aaPredicted RBP11.39□□□□□ -0.59
CLN3-235ENST00000568497 CCL3L1P16619 93 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 RAB3AP20336 220 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 HSPA13P48723 471 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 MRPL28Q13084 256 aaKnown RBP11.39□□□□□ -0.59
CLN3-235ENST00000568497 LRRC10Q5BKY1 277 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 ATPAF1Q5TC12 328 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms