RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 AVPP01185 164 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 NDUFB7P17568 137 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 SRMP19623 302 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 CAPZA1P52907 286 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 COL10A1Q03692 680 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 RSU1Q15404 277 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 NKAIN3Q8N8D7 197 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 PXT1Q8NFP0 134 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 H1FXQ92522 213 aaKnown RBP14.49□□□□□ -0.09
SHMT2-225ENST00000556798 DACT3Q96B18 629 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-225ENST00000556798 NUDT16L1Q9BRJ7 211 aaKnown RBP14.49□□□□□ -0.09
SHMT2-225ENST00000556798 TMPRSS13Q9BYE2 586 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 CNTD2Q9H8S5 307 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 ING4Q9UNL4 249 aa14.49□□□□□ -0.09
SHMT2-225ENST00000556798 NIPBLQ6KC79 2804 aaeCLIP14.48□□□□□ -0.09
SHMT2-225ENST00000556798 A0A087WXM4 84 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 PPIAL4CA0A0B4J2A2 164 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 HTR3BO95264 441 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 CALRP27797 417 aaKnown RBP14.48□□□□□ -0.09
SHMT2-225ENST00000556798 SYT6Q5T7P8 510 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-225ENST00000556798 LYPD6Q86Y78 171 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 ZNF561Q8N587 486 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 ASCC1Q8N9N2 400 aaKnown RBP14.48□□□□□ -0.09
SHMT2-225ENST00000556798 OR4D6Q8NGJ1 314 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 RAB40AQ8WXH6 277 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 PHYHIPQ92561 330 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 SHARPINQ9H0F6 387 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 C7orf69Q9H7B7 122 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 TMEM160Q9NX00 188 aa14.48□□□□□ -0.09
SHMT2-225ENST00000556798 MRPS28Q9Y2Q9 187 aaKnown RBP14.48□□□□□ -0.09
SHMT2-225ENST00000556798 A0A1W2PP11 408 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 SIRPB1O00241 398 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 ENSAO43768 121 aaKnown RBP14.47□□□□□ -0.09
SHMT2-225ENST00000556798 ARL6IP5O75915 188 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 SERPINA2P20848 420 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 GATA3P23771 443 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 MTNR1BP49286 362 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 FGF12P61328 243 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 ZNF146Q15072 292 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 CD276Q5ZPR3 534 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 AWAT2Q6E213 333 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 CD200R1LQ6Q8B3 271 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 BTNL3Q6UXE8 466 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 ASCL4Q6XD76 172 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 C1orf229Q6ZS94 237 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-225ENST00000556798 NR1H4Q96RI1 486 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-225ENST00000556798 S100A13Q99584 98 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 SLITRK2Q9H156 845 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 METTL9Q9H1A3 318 aa14.47□□□□□ -0.09
SHMT2-225ENST00000556798 RPUSD1Q9UJJ7 312 aaKnown RBP14.47□□□□□ -0.09
SHMT2-225ENST00000556798 KIR2DS1A0A191URI9 304 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 TRDV1A0A1B0GX56 115 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 TMEM82A0PJX8 343 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 MEGF11A6BM72 1044 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 J3QLI3 93 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 ZNF737O75373 536 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 CRLF1O75462 422 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 CHRM2P08172 466 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 CAV3P56539 151 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 PDCD1Q15116 288 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 PIGYQ3MUY2 71 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 SLC22A6Q4U2R8 563 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 SPIN3Q5JUX0 258 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 ELP2Q6IA86 826 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 GLIPR1L1Q6UWM5 242 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 CDH26Q8IXH8 852 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 GFI1Q99684 422 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 DCTN5Q9BTE1 182 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 MRI1Q9BV20 369 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 BEX2Q9BXY8 128 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 CHST6Q9GZX3 395 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 RHOFQ9HBH0 211 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 VCX3AQ9NNX9 186 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 EXOSC4Q9NPD3 245 aaKnown RBP14.46□□□□□ -0.09
SHMT2-225ENST00000556798 OPN4Q9UHM6 478 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 CDC42EP3Q9UKI2 254 aa14.46□□□□□ -0.09
SHMT2-225ENST00000556798 AK6Q9Y3D8 172 aaKnown RBP14.46□□□□□ -0.09
SHMT2-225ENST00000556798 NF1P21359 2839 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 ECDO95905 644 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-225ENST00000556798 OR2H2O95918 312 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 TK1P04183 234 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 SMIM18P0DKX4 95 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 HNF1AP20823 631 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 GABRR1P24046 479 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 PAX8Q06710 450 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 SCN1BQ07699 218 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 CHRFAM7AQ494W8 412 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 GLT8D1Q68CQ7 371 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 C22orf42Q6IC83 251 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 UQCC2Q9BRT2 126 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 OR51E2Q9H255 320 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 IL36GQ9NZH8 169 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 GLS2Q9UI32 602 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 STUB1Q9UNE7 303 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 AUP1Q9Y679 476 aa14.45□□□□□ -0.1
SHMT2-225ENST00000556798 SHISA3A0PJX4 238 aa14.44□□□□□ -0.1
SHMT2-225ENST00000556798 K7N7A8 449 aa14.44□□□□□ -0.1
SHMT2-225ENST00000556798 SH2D1BO14796 132 aa14.44□□□□□ -0.1
SHMT2-225ENST00000556798 GPR37O15354 613 aa14.44□□□□□ -0.1
SHMT2-225ENST00000556798 PSPNO60542 156 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms