RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RASGEF1BQ0VAM2 473 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ODF4Q2M2E3 257 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 TMEM268Q5VZI3 342 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 CBLN3Q6UW01 205 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 SLC16A9Q7RTY1 509 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 MAMDC2Q7Z304 686 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 BEND2Q8NDZ0 799 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 OR9K2Q8NGE7 335 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 OR51A4Q8NGJ6 313 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ZPLD1Q8TCW7 415 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 NDUFAF3Q9BU61 184 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ALG12Q9BV10 488 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 NMNAT2Q9BZQ4 307 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 TRIM2Q9C040 744 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 SLC35B3Q9H1N7 401 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF703Q9H7S9 590 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ZMAT3Q9HA38 289 aaKnown RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 KLHDC2Q9Y2U9 406 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 AMDHD2Q9Y303 409 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 MMP24Q9Y5R2 645 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 UNC79Q9P2D8 2635 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 A0A0A6YYH2 397 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 A0A0B4J2E0 115 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 A0A1B0GX12 115 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SMCO3A2RU48 225 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 TMEM235A6NFC5 223 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 WIPF3A6NGB9 483 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 A6NJ64 397 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 MARCH11A6NNE9 402 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF724A8MTY0 619 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 FAM171A2A8MVW0 826 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 NPIPA2E9PIF3 369 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 NPIPA3F8WFD2 350 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF264O43296 627 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZG16O60844 167 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ABHD16AO95870 558 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SPARCP09486 303 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 FGF7P21781 194 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 CHATP28329 748 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 CCR4P51679 360 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF616Q08AN1 781 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SLC10A1Q14973 349 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 UBE2V2Q15819 145 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 C4orf17Q53FE4 359 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 EMC4Q5J8M3 183 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 AKR1C8PQ5T2L2 129 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 GFI1BQ5VTD9 330 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 DPY19L2P2Q6ZN68 376 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 DOLPP1Q86YN1 238 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 BHLHE23Q8NDY6 225 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 OR10AD1Q8NGE0 317 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 MUCL1Q96DR8 90 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 POM121Q96HA1 1249 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PACRGQ96M98 296 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PSMG3-AS1Q96PY0 264 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PBDC1Q9BVG4 233 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 RAB18Q9NP72 206 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 FAM212BQ9NTI7 297 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PLA2G2EQ9NZK7 142 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 KLRF1Q9NZS2 232 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 BOKQ9UMX3 212 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SLC5A6Q9Y289 635 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 A0A1B0GWA3 101 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ALG1L2C9J202 215 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 RAB27BO00194 218 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 CCL21O00585 134 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PHOX2AO14813 284 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 HCRTR2O43614 444 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 JTBO76095 146 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 IGHG3P01860 377 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 GAPDHP04406 335 aaKnown RBP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 IFNA6P05013 189 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SFTPBP07988 381 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 GDF1P27539 372 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 IL2RGP31785 369 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 CA7P43166 264 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 UCP2P55851 309 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 S100A10P60903 97 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 RAB32Q13637 225 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 LINC01590Q5TEZ4 76 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 FAM166AQ6J272 317 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ADGRE4PQ86SQ3 457 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 TRAPPC6BQ86SZ2 158 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF440Q8IYI8 595 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 RPRMLQ8N4K4 120 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PLPP7Q8NBV4 271 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 OR51F2Q8NH61 342 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 RNF128Q8TEB7 428 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SSC4DQ8WTU2 575 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 RNF138Q8WVD3 245 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 MOGAT1Q96PD6 335 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF587Q96SQ5 575 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SCRT1Q9BWW7 348 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 CRLF2Q9HC73 371 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SIRT7Q9NRC8 400 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 SPRR3Q9UBC9 169 aa6.68□□□□□ -1.34
LIMA1-216ENST00000552909 PUS1Q9Y606 427 aaKnown RBP eCLIP6.68□□□□□ -1.34
LIMA1-216ENST00000552909 NOTCH2Q04721 2471 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 A0A087WUJ7 227 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms